PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044013-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 458aa    MW: 51011.4 Da    PI: 7.1951
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044013-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.52e-074074402154
                       HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       k +yp+++e+++L +++gL+ +q+ +WF N+R +
  PSME_00044013-RA 407 KWPYPTEDEKTRLVQETGLQLKQINNWFINQRKR 440
                       469*****************************87 PP
2ELK30.48.9e-11361382122
               ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                       ELKh+L+++Y++++ ++++E++
  PSME_00044013-RA 361 ELKHELKQGYRSRIEDIREEIL 382
                       9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.2E-17192236IPR005540KNOX1
PfamPF037903.7E-15194235IPR005540KNOX1
SMARTSM012569.4E-23247303IPR005541KNOX2
PfamPF037915.7E-16254302IPR005541KNOX2
SMARTSM011880.0016361382IPR005539ELK domain
PfamPF037898.5E-5361382IPR005539ELK domain
PROSITE profilePS5121310.301361381IPR005539ELK domain
PROSITE profilePS5007111.71381444IPR001356Homeobox domain
SuperFamilySSF466892.91E-16383448IPR009057Homeodomain-like
SMARTSM003896.5E-11383448IPR001356Homeobox domain
CDDcd000861.04E-10384443No hitNo description
Gene3DG3DSA:1.10.10.607.1E-25388445IPR009057Homeodomain-like
PfamPF059201.8E-17401440IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
CWVDGPPSLS RYRGRAADAC HLPRWTAVTR DWTGPSAWAR RHSGARQAPE TLKKQTGSGN  60
RFDIKAVIDM NEGSGLKVGA TATWLNSLSH HHHHHHPNSH VEGDQSGMMG FSAQQQQHSH  120
GSTIIDHSAS AAAAAGGGGG GGGQGRGMLD LHSDTANSSE LLGSSRSDGD HPHHHHDQQQ  180
QQQDTHMVWQ NSRLKADVLQ HPLYDQLLAA HVACLRIATP VDQLPKIDAQ LAQQHHVVSK  240
YAVLGRNQHL TGEDKEELDR FLAQYVLLLS SFKEQLQQHV RVHAMEAVMA CWELEQSLHT  300
LTGVSPGEGT GATMSDDEDD QADSDTNLFD LGLDGQDAVG SFGPLIPTEN ERSLMERVRQ  360
ELKHELKQGY RSRIEDIREE ILRKRRAGKL PGDTTSVLKS WWQAHSKWPY PTEDEKTRLV  420
QETGLQLKQI NNWFINQRKR NWHSNPSSSS ASNAKRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A5e-14384448872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1437457RKRNWHSNPSSSSASNAKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1101820.0BT110182.1 Picea glauca clone GQ03217_K05 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136984.11e-158hypothetical protein PHAVU_009G090500g
RefseqXP_007136985.11e-158hypothetical protein PHAVU_009G090500g
SwissprotP480001e-153KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLA0A3G6J9M70.0A0A3G6J9M7_PINTA; Homeobox protein knotted-1-like 3
STRINGXP_007136985.11e-157(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-143KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]