PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044287-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 576aa    MW: 64329.9 Da    PI: 6.8952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044287-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.5e-18200247148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT+eEd++l+++v+ +G g+W+t ++  g+ R++k+c++rw +yl
  PSME_00044287-RA 200 RGPWTAEEDQKLIHYVQSHGLGNWRTLPKLAGLSRCGKSCRLRWANYL 247
                       89********************************************97 PP
2Myb_DNA-binding46.96.3e-15253296146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       rg+++  Ed  ++++++ lG++ W++Ia++++ gRt++++k++w++
  PSME_00044287-RA 253 RGAFSMHEDFTIIRLHAALGNK-WSAIASHLP-GRTDNEIKNHWNT 296
                       899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF533832.54E-2527110IPR015424Pyridoxal phosphate-dependent transferase
PfamPF004647.8E-2929112IPR001085Serine hydroxymethyltransferase
Gene3DG3DSA:3.40.640.104.8E-2133114IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Gene3DG3DSA:1.10.10.601.9E-23192250IPR009057Homeodomain-like
PROSITE profilePS5129424.861195251IPR017930Myb domain
SuperFamilySSF466891.42E-31197294IPR009057Homeodomain-like
SMARTSM007178.6E-15199249IPR001005SANT/Myb domain
PfamPF002492.2E-16200247IPR001005SANT/Myb domain
CDDcd001672.36E-11202247No hitNo description
Gene3DG3DSA:1.10.10.603.3E-24251302IPR009057Homeodomain-like
SMARTSM007171.2E-13252300IPR001005SANT/Myb domain
PROSITE profilePS5129417.912252302IPR017930Myb domain
PfamPF002493.3E-13253296IPR001005SANT/Myb domain
CDDcd001673.66E-9260296No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0016740Molecular Functiontransferase activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MISVGSFIWK CIKNGTNPRK EKGENGWHRS ATSNYFESFP YKVSHETGLI DYDKLEEKAL  60
DFRPKLIICV GSAYFRDLDY ARFRTIADKC GSMLLCDMAS ISGLVAAQIM AEDMFGVLVQ  120
ERNEALPEGM VVLDSFNDLV AEMRAYHYDA MKFSLKLKSM PGSSGQRETP FPLIICSEKG  180
RYILIMGRAP CCGDHEGLKR GPWTAEEDQK LIHYVQSHGL GNWRTLPKLA GLSRCGKSCR  240
LRWANYLKPD IKRGAFSMHE DFTIIRLHAA LGNKWSAIAS HLPGRTDNEI KNHWNTKLKK  300
RLLLLGIDPV THMSLPTPDM LSSFMASSSL GAQLGQLARE SHNISQVSAG SVDQNSWQLS  360
QILKLLGTHN NPVWAHASGP LSSISMEQLL QLDALRGQLN SSSHNQINQA FVPGLKDADS  420
AEHNAFSQES SRFSYQEVKS EGKKLPIGTD KVNEHRTASS LIEDQPSAFD AEITDWKSMP  480
ILMPASNPDK NDNLYYYSDT KSSSTSSTNS FKGLSEILEN TIQYHQNDLF GPVIRTSDSM  540
SLPAARADLQ EDERNYWINL LNSIEDTNLS LPLPSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-291983025108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE5745647e-67HE574564.1 Pinus pinaster mRNA for cytosolic serine hydroxymethyltransferase (cshmt gene).
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28110.12e-67myb domain protein 41