PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044411-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34949.2 Da    PI: 5.3472
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044411-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-1851104356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k++++t eq+++Le+ Fe  +++  e++ +LAk lgL+ rq+ vWFqNrRa+ k
  PSME_00044411-RA  51 KKRRLTIEQVKRLEKSFEVANKLEPEKKIQLAKALGLQPRQIAVWFQNRRARCK 104
                       456899**********************************************99 PP
2HD-ZIP_I/II118.53.6e-3851142293
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       kkrrl+ eqvk LE+sFe  +kLepe+K +la++Lglqprq+avWFqnrRAR ktkq+Ekdy+aLk++yd lk++ +++ +e+++ +ee+k+
  PSME_00044411-RA  51 KKRRLTIEQVKRLEKSFEVANKLEPEKKIQLAKALGLQPRQIAVWFQNRRARCKTKQVEKDYNALKQEYDDLKRKYDTVFHENRQFKEEVKR 142
                       9**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.18E-1846107IPR009057Homeodomain-like
SMARTSM003899.1E-1849110IPR001356Homeobox domain
CDDcd000864.01E-1651107No hitNo description
PfamPF000462.3E-1551104IPR001356Homeobox domain
PROSITE profilePS5007116.22851106IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.7E-1953113IPR009057Homeodomain-like
PRINTSPR000312.5E-57786IPR000047Helix-turn-helix motif
PROSITE patternPS00027081104IPR017970Homeobox, conserved site
PRINTSPR000312.5E-586102IPR000047Helix-turn-helix motif
PfamPF021831.1E-10106144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MVSPASVTRC KCENKRKSSM NPPSHSRTMD LFDNDTGEEY GSDDCLYFGG KKRRLTIEQV  60
KRLEKSFEVA NKLEPEKKIQ LAKALGLQPR QIAVWFQNRR ARCKTKQVEK DYNALKQEYD  120
DLKRKYDTVF HENRQFKEEV KRLNRESGNS TDQNSGLSAF DFEIETLQSS ANSALKTTDV  180
PMESKICQKG AAPLEDIYPT IMNKQEVACC SIMSEAASSV FNIDSPRTIE SPSSPRFPQI  240
VATTNAADSS PVRAVEGSSI GAQIAGGLET LPEVEGNEIS SLDQAKETCR NLFYSFDEQG  300
SFMLWDYWPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
198106RRARCKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG41e-157A9NVG4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.17e-41HD-ZIP family protein