PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044412-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 285aa    MW: 32369.9 Da    PI: 8.2122
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044412-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.4e-171972356
                      --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                      k++++t eq++ Le+ Fe  +++  e++ +LAk lgL  rq++vWFqNrRa+ k
  PSME_00044412-RA 19 KKRRLTFEQVKMLEKSFEVGNKLEFERKMQLAKALGLHPRQISVWFQNRRARCK 72
                      5568999*********************************************98 PP
2HD-ZIP_I/II112.62.6e-3618110193
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       ekkrrl+ eqvk+LE+sFe  +kLe erK++la++Lgl+prq+ vWFqnrRAR k+kq+Ek++ aLk++y++lk + e L++e+++ ++e+k+
  PSME_00044412-RA  18 EKKRRLTFEQVKMLEKSFEVGNKLEFERKMQLAKALGLHPRQISVWFQNRRARCKAKQVEKEFGALKQEYESLKGKCEILRAENRRFKAEMKR 110
                       69**************************************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.051474IPR001356Homeobox domain
SMARTSM003898.6E-161778IPR001356Homeobox domain
SuperFamilySSF466891.59E-181775IPR009057Homeodomain-like
PfamPF000461.8E-141972IPR001356Homeobox domain
CDDcd000861.76E-141975No hitNo description
Gene3DG3DSA:1.10.10.601.2E-171972IPR009057Homeodomain-like
PRINTSPR000311.3E-54554IPR000047Helix-turn-helix motif
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PRINTSPR000311.3E-55470IPR000047Helix-turn-helix motif
PfamPF021831.3E-974112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MDLSDNDIGE EDVLHVAEKK RRLTFEQVKM LEKSFEVGNK LEFERKMQLA KALGLHPRQI  60
SVWFQNRRAR CKAKQVEKEF GALKQEYESL KGKCEILRAE NRRFKAEMKR LSREPEKIDR  120
NSKVRGFEIK PQHKSKNLVL EQTNTAMELS VKLETCKNCT EPVINASPAT RKGHEGGCYS  180
ISSEPGSSVF NWDKPRTIQS PQSLCDPLTA GAAKYSSPLP LEGLSVAGQA QKTPPPSGHE  240
MQCLPKVEVE SAWLNQGDKN SCTLFHSLDD QGALMLWEYW HLPDE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16674RRARCKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQH83e-92A9NQH8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26960.11e-36homeobox protein 23