PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044429-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 689aa MW: 77863.5 Da PI: 4.989

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044429-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.7e-15	294	337	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r++ T+eE+ +++++ +lG++ W++Ia+ ++ gRt++++k++w++ PSME_00044429-RA 294 RNKITPEEERVIIELHGRLGNR-WSRIAQSLP-GRTDNEIKNYWRT 337 6788****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.530.20	6.2E-11	158	215	IPR023393	START-like domain
SuperFamily	SSF55961	1.52E-7	159	215	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.6E-8	274	301	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.98E-18	274	348	IPR009057	Homeodomain-like
PROSITE profile	PS51294	23.656	289	343	IPR017930	Myb domain
SMART	SM00717	9.9E-14	293	341	IPR001005	SANT/Myb domain
Pfam	PF00249	2.8E-13	294	337	IPR001005	SANT/Myb domain
CDD	cd00167	9.75E-11	298	337	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-19	302	339	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 689 aa Download sequence Send to blast
MLANPPLCHC PLALWRPSGG QVDQREYDRE IVLNVMGYVE GMLNVMSNAV VAATTTTETN 60 RIEDQENIQQ MVSSLIINRY GLVNLSENVD IGRLQDGWRG EIEEPSSNLS GGSKQSCKAG 120 VAQYLQQGEE AYGEWLQELV GLYHFHSLDD GEREFIKCSA VVVQRVEAPA SIVWSLVRRF 180 NEPQIYKPFV RSCFIRSDHG NVKVGCVRKV RFVSSLLPLP PPPPSKQGQR RSMGTKGPPF 240 TGGAILRIAP PVKGCPLSPM ERRSPCFDGG GGLKRTGKCC RLWWVNYLRP NLKRNKITPE 300 EERVIIELHG RLGNRWSRIA QSLPGRTDNE IKNYWRTRIE KKMNIRPQSC NSSMDAANKV 360 IIERSTTSNS ITGSSQRPSH LDIVEPPTTS LQRKTNEEIE VQTNATPYLQ DDISSQVIPI 420 TEGNYANKLK GEVEGQDNQL FENNLLYNFP VGSLPIFLYS SEFGIDDPTQ DGRMAPSCSY 480 MVDYLEAFSD SETYLNRYSD DFNGIDDDFG EDEKINNGED DFPPNEDLNE TDDEFPPSED 540 VNGNDDDFHP SEDFNGNDDD FPPSEDFNGT EDDFPPSRHV MIASCGRLAN VDICACFSIC 600 SIARDRECRK IVSCFFCLPH PQARKMANNR SLHCVLNIAF RWVKDSSISE LEQLCDELRL 660 MANILFVFFS LYRNLRAVRK RKLNSFGKH

Sequence ? help Back to Top

Protein Sequence Length: 689 aa Download sequence Send to blast

MLANPPLCHC PLALWRPSGG QVDQREYDRE IVLNVMGYVE GMLNVMSNAV VAATTTTETN  60
RIEDQENIQQ MVSSLIINRY GLVNLSENVD IGRLQDGWRG EIEEPSSNLS GGSKQSCKAG  120
VAQYLQQGEE AYGEWLQELV GLYHFHSLDD GEREFIKCSA VVVQRVEAPA SIVWSLVRRF  180
NEPQIYKPFV RSCFIRSDHG NVKVGCVRKV RFVSSLLPLP PPPPSKQGQR RSMGTKGPPF  240
TGGAILRIAP PVKGCPLSPM ERRSPCFDGG GGLKRTGKCC RLWWVNYLRP NLKRNKITPE  300
EERVIIELHG RLGNRWSRIA QSLPGRTDNE IKNYWRTRIE KKMNIRPQSC NSSMDAANKV  360
IIERSTTSNS ITGSSQRPSH LDIVEPPTTS LQRKTNEEIE VQTNATPYLQ DDISSQVIPI  420
TEGNYANKLK GEVEGQDNQL FENNLLYNFP VGSLPIFLYS SEFGIDDPTQ DGRMAPSCSY  480
MVDYLEAFSD SETYLNRYSD DFNGIDDDFG EDEKINNGED DFPPNEDLNE TDDEFPPSED  540
VNGNDDDFHP SEDFNGNDDD FPPSEDFNGT EDDFPPSRHV MIASCGRLAN VDICACFSIC  600
SIARDRECRK IVSCFFCLPH PQARKMANNR SLHCVLNIAF RWVKDSSISE LEQLCDELRL  660
MANILFVFFS LYRNLRAVRK RKLNSFGKH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-19	275	344	40	109	B-MYB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	5e-34	myb domain protein 24