PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044492-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 63aa MW: 6895.66 Da PI: 4.1306

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044492-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	25.5	2.6e-08	4	27	36	59
EEEEE-SSSTTEEEEEEES--SS- CS WRKY 36 kkversaedpkvveitYegeHnhe 59 +v+r+aedp++v++tYegeH+h+ PSME_00044492-RA 4 EQVQRCAEDPTIVITTYEGEHTHS 27 59*********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50811	8.559	1	29	IPR003657	WRKY domain
SuperFamily	SSF118290	5.36E-6	4	28	IPR003657	WRKY domain
Gene3D	G3DSA:2.20.25.80	1.5E-7	4	27	IPR003657	WRKY domain
Pfam	PF03106	3.2E-5	5	26	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 63 aa Download sequence Send to blast
MDSEQVQRCA EDPTIVITTY EGEHTHSLNP LVVGDNQSIP CIARISTSST LPTITLDLTD 60 NRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A482CVK9	4e-22	A0A482CVK9_9SPER; WRKY164

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	8e-09	WRKY family protein