PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044524-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 169aa    MW: 18526.2 Da    PI: 8.3637
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044524-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260143.66.1e-45141131100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+CakdC++apyfp+++p+kfa vh++FGasnv kll++lpee+r da+ss+vyeA+ar+rdP+yG+vg i++lqqq++ lk++
  PSME_00044524-RA  14 PCAACKLLRRRCAKDCIFAPYFPSDDPNKFASVHRVFGASNVNKLLQDLPEEQRGDAVSSMVYEANARVRDPIYGCVGAISSLQQQVAILKSQ 106
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       lal+++e
  PSME_00044524-RA 107 LALAQAE 113
                       ***9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.20113114IPR004883Lateral organ boundaries, LOB
PfamPF031955.4E-4414111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MRETISKSSN GMSPCAACKL LRRRCAKDCI FAPYFPSDDP NKFASVHRVF GASNVNKLLQ  60
DLPEEQRGDA VSSMVYEANA RVRDPIYGCV GAISSLQQQV AILKSQLALA QAEIVHLKMR  120
QTSLPALFTN SNTKMMMMDE GSSLTSLAEG YAFDDANLSS SNLYSKKCL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-461311510112LOB family transfactor Ramosa2.1
5ly0_B3e-461311510112LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1074401e-170BT107440.1 Picea glauca clone GQ03107_I11 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004294159.19e-72PREDICTED: LOB domain-containing protein 4
SwissprotQ9SHE92e-60LBD4_ARATH; LOB domain-containing protein 4
TrEMBLA0A2P6Q8S71e-68A0A2P6Q8S7_ROSCH; Putative transcription factor AS2-LOB family
STRINGXP_004294159.14e-71(Fragaria vesca)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.18e-63LOB domain-containing protein 4