PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044689-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 270aa MW: 29732.9 Da PI: 7.9316

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044689-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.6	2.3e-08	120	168	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er+R d+++ ++L +ll + + +++K + ++ L +A+++I++Lq PSME_00044689-RA 120 HKLVERQRQDKMKALCSTLISLLAEEF--RKTKHTISDKLLEAINHIHHLQ 168 99*********************65..*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.08	115	167	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-7	119	183	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.49E-8	119	186	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.80E-9	120	171	No hit	No description
Pfam	PF00010	1.8E-5	120	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MELGTCVYDD ALATVVFDAL STKRPHDYGM LGTASLGPVL DLTSADDSSP AVTQCLQEFV 60 GNFGDPAQTL TCKSSANSLL NSRNPLSPPT QSNRRKKAVA GGRGHDLEAS ADCIGNSDVH 120 KLVERQRQDK MKALCSTLIS LLAEEFRKTK HTISDKLLEA INHIHHLQAK LIELEKKRDE 180 QKATVKPFFV LSVFKTLKTS QVRPSNVLDK FQTIRVSKFG PGVQDTVNTF KNQIEFSSLL 240 MVLEEAEVDV VNATVSAIND RVFYSIHSKT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NXF2	3e-60	A9NXF2_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51780.1	7e-14	bHLH family protein