PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044720-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 391aa    MW: 43980.2 Da    PI: 8.8827
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044720-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.4e-0591113123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y C++C++ F r  nL+ H r+H
  PSME_00044720-RA  91 YICEICNQGFHRDQNLQMHRRRH 113
                       89********************9 PP
2zf-C2H216.32.7e-05169190223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        C +C+k +  +s++k H+rt+
  PSME_00044720-RA 169 MCDKCSKEYAVQSDFKAHLRTC 190
                       7*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.27E-690113No hitNo description
Gene3DG3DSA:3.30.160.603.3E-590113IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.74191113IPR007087Zinc finger, C2H2
SMARTSM003550.00991113IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
SMARTSM0035598132162IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.0E-5159189IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.27E-6163189No hitNo description
SMARTSM0035551168195IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MKINMLKELV LLLEGSMNSA SDTSGSLQWT SMHIQAVPGS QFSSLRTSSP CPVSSTTTNN  60
NKRKRRPAGT PDPDAEVVAL SPKTLMESDR YICEICNQGF HRDQNLQMHR RRHKVPWKLL  120
RKPTPEVRKR VYVCPEPTCL HNDPCHALGD LVGIKKHFRR KHSIEKQWMC DKCSKEYAVQ  180
SDFKAHLRTC GTKGHSCDCG RVFSRVESFI EHQDNCIIAK ERVAFKYSNQ PSLPCLTAIG  240
SHETLGLLSP TRSGLSSVGV QFDSGKLHDH AAWLNMETRE RQFLPVKHPS NIFETAIRPA  300
NNGAIVARDH ITNFASDLGS IPATLPVDEH GFRHDTFESD PCLELSIGLS TDPLENHKIK  360
PFNMKPDLFT AVNRRQPRNE VRTQLAFGLG L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-17165224463Zinc finger protein JACKDAW
5b3h_F2e-17165224463Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528998.11e-105protein SHOOT GRAVITROPISM 5
RefseqXP_020240417.11e-105zinc finger protein SHOOT GRAVITROPISM 5
RefseqXP_028240003.11e-105zinc finger protein SHOOT GRAVITROPISM 5-like
TrEMBLA0A151RFD51e-105A0A151RFD5_CAJCA; Zinc finger protein MAGPIE
STRINGGLYMA07G12170.11e-104(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01940.11e-101C2H2-like zinc finger protein