PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00044817-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HD-ZIP

Protein Properties

Length: 128aa MW: 15125.3 Da PI: 10.463

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00044817-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.2	5e-12	2	26	32	56
HHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56 +LA +lgL+ rqV vWFqNrRa+ k PSME_00044817-RA 2 QLAVELGLQPRQVAVWFQNRRARSK 26 8**********************99 PP
2	HD-ZIP_I/II	83	4.3e-27	2	63	31	92
HD-ZIP_I/II 31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +la eLglqprqvavWFqnrRAR ktk+lE+dy+ Lk++y+++++++++L+ +v++L++e+ PSME_00044817-RA 2 QLAVELGLQPRQVAVWFQNRRARSKTKHLEQDYDDLKQQYEEVVSQKKKLKGQVARLTQEVV 63 8*********************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	12.811	1	28	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-12	2	35	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.37E-10	2	37	IPR009057	Homeodomain-like
CDD	cd00086	4.72E-7	2	29	No hit	No description
Pfam	PF00046	2.3E-9	2	26	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	3	26	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MQLAVELGLQ PRQVAVWFQN RRARSKTKHL EQDYDDLKQQ YEEVVSQKKK LKGQVARLTQ 60 EVVAAEGKKK YINYSQNPRR KWLAEDDDKY NRRNAEHKPK LLQLRRFQPK AFVAISLLQY 120 PSGDLQDG

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007138213.1	1e-18	hypothetical protein PHAVU_009G190200g
Swissprot	A2XD08	1e-16	HOX21_ORYSI; Homeobox-leucine zipper protein HOX21
Swissprot	Q8S7W9	1e-16	HOX21_ORYSJ; Homeobox-leucine zipper protein HOX21
TrEMBL	A9NYL7	3e-32	A9NYL7_PICSI; Uncharacterized protein
STRING	XP_007138213.1	5e-18	(Phaseolus vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26960.1	7e-19	homeobox protein 23