PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00044865-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family E2F/DP
Protein Properties Length: 305aa    MW: 34153 Da    PI: 7.3394
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00044865-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP26.51.1e-083577138
           E2F_TDP  1 rkeksLrlltqkflkllekseegivtlnevakeLvse.....d 38
                      r+eksL+lltqkf++l+  +++++v+l+++a+ L+ e     +
  PSME_00044865-RA 35 RREKSLGLLTQKFVQLFLVTQAQVVSLEDAARLLIGEckelaK 77
                      689*******************************998666653 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.8E-83069IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013724.2E-43584IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF033645.2E-1265147IPR005031Coenzyme Q-binding protein COQ10, START domain
SuperFamilySSF559612.91E-982155No hitNo description
Gene3DG3DSA:3.30.530.204.5E-684156IPR023393START-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010239Biological Processchloroplast mRNA processing
GO:0031426Biological Processpolycistronic mRNA processing
GO:0005667Cellular Componenttranscription factor complex
GO:0005739Cellular Componentmitochondrion
GO:0042644Cellular Componentchloroplast nucleoid
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MNNVQVCLAS DDEEEEHSSN ENSCPLENVK RQDCRREKSL GLLTQKFVQL FLVTQAQVVS  60
LEDAARLLIG ECKELAKLKT KVNGKELHFA MVDGDFKRYE GKWSLRPGPR SRTTILYYEV  120
TVKPRFNFPA IFVERIIRTD LPLNLLAVAA RAEAKSGTSL KMLPCQKNNP FLSPETVPSA  180
SDKNSTDTFP VTRVPSDSQK VKALYCEMDH QAQYDDVEDK KSTATILKLS TISINDLCDV  240
SNAWGATGKA CNLGRPCVVD EVHLRRLDDL LENGGVHRRV IATITVNAPS RKVWNILTAY  300
ESLPE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020524507.11e-62uncharacterized protein LOC18436761 isoform X5
TrEMBLA0A3Q8BQ655e-79A0A3Q8BQ65_9SPER; HCF145
STRINGERN086275e-62(Amborella trichopoda)
STRINGXP_009763038.14e-62(Nicotiana sylvestris)
STRINGXP_008785879.14e-61(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.23e-11DP-E2F-like 1