PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045249-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

BBR-BPC

Protein Properties

Length: 187aa MW: 20760 Da PI: 10.6095

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045249-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	256.4	1.7e-78	28	187	153	301
GAGA_bind 153 rqrakkpkekkakkkkkksekskkkvkkesader..................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGn 227 +++k+ ++ +k + ++++++++ + +k+e+k++d+v+ng+ +D+st+P+PvC+CtG+ +q Y+WGn PSME_00045249-RA 28 ISKKKDGEKESPSKRNSDGSEPTRQK-------KqrkpgviteeglngevaiVKKEQKNLDVVINGIVFDISTMPIPVCTCTGVAQQFYRWGN 113 11111111111111111111111111.......0112223333455566666*************************************** PP GAGA_bind 228 GGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 GGWqSaCCtt+iS+yPLP+++ rrgaR+agrKmS+gaf+klLe+L a Gy+l+ p+DLk++WA HGtnkfvtir PSME_00045249-RA 114 GGWQSACCTTSISMYPLPMNPSRRGARVAGRKMSGGAFRKLLERLGAKGYNLNYPIDLKSYWATHGTNKFVTIR 187 ***********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.3E-66	1	187	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	5.3E-76	27	187	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MRPINVAFPS PVLETPLFGE PQKTVKRISK KKDGEKESPS KRNSDGSEPT RQKKQRKPGV 60 ITEEGLNGEV AIVKKEQKNL DVVINGIVFD ISTMPIPVCT CTGVAQQFYR WGNGGWQSAC 120 CTTSISMYPL PMNPSRRGAR VAGRKMSGGA FRKLLERLGA KGYNLNYPID LKSYWATHGT 180 NKFVTIR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF677529	0.0	EF677529.1 Picea sitchensis clone WS02770_D01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001268137.1	1e-61	GAGA-binding transcriptional activator BBR/BPC1-like
Refseq	XP_010649609.1	1e-61	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_010650043.1	1e-61	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_010650443.1	1e-61	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X2
Refseq	XP_019076461.1	2e-61	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
Refseq	XP_019076625.1	2e-61	PREDICTED: GAGA-binding transcriptional activator BBR/BPC1-like isoform X1
Swissprot	P0DH88	3e-57	BBRA_ORYSJ; Barley B recombinant-like protein A
Swissprot	P0DH89	3e-57	BBRB_ORYSJ; Barley B recombinant-like protein B
TrEMBL	B8LNW9	1e-120	B8LNW9_PICSI; Uncharacterized protein
STRING	VIT_01s0011g06380.t01	1e-60	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14685.3	3e-58	basic pentacysteine 2

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]