PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045269-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 155aa    MW: 17942.3 Da    PI: 9.3102
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045269-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.44.1e-143382255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                      +y+GV+ ++ +gr++AeI+dp++   + r +l +++taeeAa a++ a++ ++g
  PSME_00045269-RA 33 RYRGVCTHP-WGRFAAEICDPKT---KERRWLRTYDTAEEAACAYDFAARVMRG 82
                      69*******.**********954...4999****************99999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.05E-183390IPR016177DNA-binding domain
PfamPF008471.8E-83382IPR001471AP2/ERF domain
PROSITE profilePS5103218.2683390IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-233389IPR001471AP2/ERF domain
CDDcd000185.29E-243389No hitNo description
SMARTSM003802.6E-253396IPR001471AP2/ERF domain
PRINTSPR003675.8E-63445IPR001471AP2/ERF domain
PRINTSPR003675.8E-65672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKSQQQSELQ KNEILIPNKL SEKQFKRGKE SVRYRGVCTH PWGRFAAEIC DPKTKERRWL  60
RTYDTAEEAA CAYDFAARVM RGIKARTNFI YLTSEHCMLS TPTPPSSLTG SMFPTNIKDP  120
FSHKPQKLQD SWHDCLWRDS STTRPGPCDE AKQQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-142889971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016552721.16e-29PREDICTED: ethylene-responsive transcription factor ESR1-like
RefseqXP_016557500.16e-29PREDICTED: ethylene-responsive transcription factor ESR1-like
TrEMBLA0A1U8F2551e-27A0A1U8F255_CAPAN; Ethylene-responsive transcription factor LEP
TrEMBLA0A1U8FFL61e-27A0A1U8FFL6_CAPAN; ethylene-responsive transcription factor ESR1-like
TrEMBLA0A2G2VN091e-27A0A2G2VN09_CAPBA; Ethylene-responsive transcription factor LEP
TrEMBLA0A2G3B9081e-27A0A2G3B908_CAPCH; Ethylene-responsive transcription factor LEP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.13e-19DORNROSCHEN-like