PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045270-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 149aa    MW: 17007 Da    PI: 6.5071
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045270-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.82.6e-083371047
               AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47
                      +++gr++AeI dp++   + r +lg+++t eeAa  ++
  PSME_00045270-RA  3 RSTGRFAAEISDPKT---KERRWLGTYDTTEEAACTYD 37
                      679*********954...4999************8887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103214.71153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18252IPR001471AP2/ERF domain
SMARTSM003801.3E-13259IPR001471AP2/ERF domain
CDDcd000184.29E-17252No hitNo description
SuperFamilySSF541718.5E-13353IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MKRSTGRFAA EISDPKTKER RWLGTYDTTE EAACTYDFGA RAMSGIKAQT NFLYLNSEHC  60
MLSTATPPAS LTGSRFPTNI KDPFSNKPQK LQDSWLDCLW QDSITTRPIP CDEAKQQQKK  120
QQFNFALEEI LHLTAELFDS QQYGNGYYS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021633693.17e-21ethylene-responsive transcription factor ESR2-like
TrEMBLA0A2C9UNF52e-19A0A2C9UNF5_MANES; Uncharacterized protein
STRINGcassava4.1_026470m3e-20(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.16e-22DORNROSCHEN-like