PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045288-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 593aa    MW: 66050.4 Da    PI: 5.0868
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045288-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.85.3e-08179226253
               AP2   2 gykGV.rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53 
                       +y GV ++ k +g W A+Ir     gk+ r+ lg f t+ +Aa a++ a ++l
  PSME_00045288-RA 179 DYIGVpSYGK-NGNWSARIRN----GKNGRVKLGDFPTPTMAAIAYDTAFLYL 226
                       7999977777.8*********....3479******************997776 PP
2HLH22.62e-07478507736
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapsk 36 
                       + ErrRR++++++fe Lr+++P+ sk++ +
  PSME_00045288-RA 478 ISERRRREKLKESFEALRSVIPPGSKEGTG 507
                       56*********************5444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.42E-11178238No hitNo description
PROSITE profilePS5103213.88179238IPR001471AP2/ERF domain
SMARTSM003802.0E-4179244IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.0E-10180239IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-8180238IPR016177DNA-binding domain
SuperFamilySSF474591.32E-6472508IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.84E-5475500No hitNo description
Gene3DG3DSA:4.10.280.106.0E-6477503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-4479506IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 593 aa     Download sequence    Send to blast
MIDPQLIGDQ FDKLYKFSAQ PMVDESDEEQ EDPEAIVVPR VQSQVSMKKR ESLMSTERRL  60
TQHEKINAQE WRMDSPRTLG FRVAARRYTA VPSQEILFCF TDFLSFGFPG ITSRAIPPHS  120
YSNINIADMP RRRNNKRENP VADDGDGSPI RTEAEQEVNQ TGVGDDNARI MQRGSGSKDY  180
IGVPSYGKNG NWSARIRNGK NGRVKLGDFP TPTMAAIAYD TAFLYLKRKR EPDSLNFPQY  240
VSDINSMLED CSPLKSNKNV KLVAEKVANN LAQRLFDIQP ETMNYINIQD WQLGSSTSAA  300
SDRGNSGGSP LLDESFHERS TIQVDAHAIP TSNQDSIQDA APAIPTSSPV STPVQIESAG  360
GVEGVEEVSD EDSMLLSMEY PLRHSPDCVL LGPVPGANTH PEYIWKGSVK EGKPGKNVSD  420
LLLMITMFSP KYEKTATIVV FYSNTAPFFT VMNRLELEMT PYTQFRREGD KILIHRMISE  480
RRRREKLKES FEALRSVIPP GSKEGTGTNS TVQQQGSTTT EGSDNVVAVE VSKIGGSNNP  540
FDEKGIVVVV DRMMNMIDLM IVVLRTLREM GAPLICMETS TTHDDHDPSC LQF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479484ERRRRE
2480485RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.11e-07ERF family protein