PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045485-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 768aa    MW: 81785.2 Da    PI: 10.1231
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045485-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.52.3e-05112134123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  PSME_00045485-RA 112 FVCEICNKGFQRDQNLQLHRRGH 134
                       89******************988 PP
2zf-C2H212.10.00061188210123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k++  +s+ k H +t+
  PSME_00045485-RA 188 WKCDKCSKRYAVQSDWKAHSKTC 210
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.18E-7111134No hitNo description
Gene3DG3DSA:3.30.160.602.7E-5111134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.949112134IPR007087Zinc finger, C2H2
SMARTSM003550.017112134IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280114134IPR007087Zinc finger, C2H2
SMARTSM00355290153183IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.9E-4175209IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.18E-7183208No hitNo description
SMARTSM00355140188208IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MRRLSKSVIL CQTEAREGTG ERKTGCEKPG CGKKEKTKRR QRGNDKHHSI LMHNIRWMPR  60
SLAFPFPSCL APLRPGAYAL LSTLLRLIYR LRNPDAEVIA LSPRTLMTTN RFVCEICNKG  120
FQRDQNLQLH RRGHNLPWKL KQRNSKEIRK RVYICPEKSC VHHDPARALG DLTGVKKHFC  180
RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTREYRCDCG TLFSRRDSFI THRAFCDALA  240
EESARVSAGI TVGGIQLPSN NSLSAGLQAG GSSMSVMRGV AGVGAGAGTG VGSSSSFRPG  300
SGVPPLAAAQ FPFTVRPSRM GGIPESGLSL VSNTNAGSAS RPRLSLWPEN TDQMMGGQHN  360
SQHIQPMNPM DVNPSAFFAQ SPKTMQAMLG LSDYDDSQAG KGANLSGFLP MSSSNSGTLY  420
SNLLTSGSLN ASAGINTDFG VTNWTDRSGS AASRRSLSTS AGLTTSSSSN ANNNINVDSL  480
YSSNNNNTNS QQHHHQQQTY IPQMSATALL QKAAQMGATA SNSPIFGVFG MAGSDMGLGL  540
SWHESATGGQ EGQQRAAGMG EMVSGLDHNS HPFGISSHGG HSGSQFGGNT RSPEHAGLQD  600
LMNSLSGAAG SGFFTGGTVL SNTQFGGNVG DSGNTFGRMI NISATASDNN NQRMNSLSND  660
IRSFTQKPVG IQGGRSHPNL VFPGIGGLNP RTADQEGGDG LTRDFLGVGH AAAGGQLGRT  720
HLSQRELANI SSLGSGIDLV SYTNQRDNSQ SVATADAELS PTKSWDAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-35184248367Zinc finger protein JACKDAW
5b3h_F5e-35184248367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024365599.11e-150protein indeterminate-domain 1-like isoform X1
TrEMBLA0A2K1L2D81e-149A0A2K1L2D8_PHYPA; Uncharacterized protein
STRINGPP1S165_3V6.11e-148(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.21e-104C2H2 family protein