PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045510-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 496aa    MW: 55882.9 Da    PI: 7.6218
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045510-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox16.81.2e-05226260337
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkkl 37 
                       k++++t+eq+++Le+ Fe  +++  e++ +LAk l
  PSME_00045510-RA 226 KKRRLTSEQVKTLEKNFEVGNKLELERKIQLAKAL 260
                       45689***************************998 PP
2Homeobox48.21.8e-152583011356
                       HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       ++Le+ Fe  +++  e++ +LAk lgL+ rq+ vWFqNrRak +
  PSME_00045510-RA 258 KALEKSFEVGNKLELERKIQLAKALGLQPRQIAVWFQNRRAKCR 301
                       68****************************************98 PP
3HD-ZIP_I/II90.12.7e-292583391293
       HD-ZIP_I/II  12 klLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                       k+LE+sFe  +kLe erK +la++Lglqprq+avWFqnrRA+ +t qlE+d+++L ++y  lk++ + L +e+ + ++++++
  PSME_00045510-RA 258 KALEKSFEVGNKLELERKIQLAKALGLQPRQIAVWFQNRRAKCRTMQLERDFDMLNQEYGVLKSKYDILLQENGQFKDKVQR 339
                       79*******************************************************************9999999998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.5E-13224307IPR001356Homeobox domain
PROSITE profilePS5007114.673225303IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.4E-4226259IPR009057Homeodomain-like
PfamPF000461.2E-12258301IPR001356Homeobox domain
CDDcd000861.49E-12258304No hitNo description
SuperFamilySSF466894.71E-15259314IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-16260302IPR009057Homeodomain-like
PRINTSPR000312.6E-5274283IPR000047Helix-turn-helix motif
PROSITE patternPS000270278301IPR017970Homeobox, conserved site
PRINTSPR000312.6E-5283299IPR000047Helix-turn-helix motif
PfamPF021837.4E-9304344IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    Send to blast
MAENTSPGCG CGCARQDDDR GDFGGRARAR LGANTFKAVN SKVERVVGLV HQVLLNFGEW  60
SGEVNLIVIP LDDFDVVLGQ YFMKKEKEAP MLHLESLAFL AKMDPIYVRT VKILLGEQKV  120
ITLETSPPIT TTRNLDGEQC KECVGIEEVT RLQELLTSKN MTTEGHCTKA MASYTSIGLQ  180
VAGSIKLYGC ENTRKRSMCF SSSMDLSEHD TREEEGPDEF LYFGEKKRRL TSEQVKTLEK  240
NFEVGNKLEL ERKIQLAKAL EKSFEVGNKL ELERKIQLAK ALGLQPRQIA VWFQNRRAKC  300
RTMQLERDFD MLNQEYGVLK SKYDILLQEN GQFKDKVQRL NRELEKIHDN RKARGFKIES  360
HQKLANPVFK PTNSPIELSV KKEIAINCSD PLHYVYPMIS KEAASSAFNI HRGTLESSPS  420
PVSLISVDTN SSSICLEGYS VRQQVTGGGL ETHPAGHLSR CLPKVEVDQS GIHQAEDNRC  480
NLFCSLEGQN RLMLRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NVG46e-85A9NVG4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.11e-31HD-ZIP family protein