PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045527-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 327aa MW: 36809.3 Da PI: 4.6496

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045527-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	379	1.4e-116	112	320	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+a lgpkcalwd +rpaqg++w+qdycs fh tla neg+pg++pvlrp+gid kdg+lfaal +gipecegaatakspwna PSME_00045527-RA 112 PPPAACLGPKCALWDFSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLRPGGIDPKDGPLFAAL--------IGIPECEGAATAKSPWNAY 196 89*************************************************************9........7************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdkprrafesgnrkq slpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00045527-RA 197 ELFDMYVLEGESMREWLFFDKPRRAFESGNRKQCSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 289 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00045527-RA 290 LKMVCSKKNTKGKVEGDPLVDLQHQLGKLSA 320 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
DFLVDDLHTP EKDFERVSRC TNIGEGLHQN SYPQTSEQLP ANIEHQENNN YVQTSEQLPP 60 NLVEGLEVTS GLEGGQINFH QDYIPTAQPI FTLTGEEETS PVFNGPQLGL CPPPAACLGP 120 KCALWDFSRP AQGTKWCQDY CSDFHMTLAS NEGAPGMRPV LRPGGIDPKD GPLFAALIGI 180 PECEGAATAK SPWNAYELFD MYVLEGESMR EWLFFDKPRR AFESGNRKQC SLPDYSGRGW 240 HESRKQVIKD FGGLKRSYYM DPQPSTQFEW HLYEYEINDC DACALYRLEL KMVCSKKNTK 300 GKVEGDPLVD LQHQLGKLSA EFSWVAK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-125	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-115	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-123	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-124	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-118	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]