PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045602-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 195aa MW: 22004.3 Da PI: 9.1987

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045602-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	128.3	3.4e-40	41	140	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA+ar+rdPvyG++g+i +lq+q++ l++e PSME_00045602-RA 41 PCAACKLLRRRCAQECPFSPYFSPLEPNKFASVHKVFGASNVSKMLMKVPESQRADAANSLVYEANARLRDPVYGSTGTIYSLQRQIQLLQVE 133 7******************************************************************************************** PP DUF260 94 lallkee 100 +++++e PSME_00045602-RA 134 FNAVRAE 140 *999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.322	40	141	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-40	41	138	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
IVITDRDSNR LCRKIFEQAD ICEMARRPII GAPAAINTVT PCAACKLLRR RCAQECPFSP 60 YFSPLEPNKF ASVHKVFGAS NVSKMLMKVP ESQRADAANS LVYEANARLR DPVYGSTGTI 120 YSLQRQIQLL QVEFNAVRAE VMRYKYRDPV FQPPMVGVYD VSSDDFMVTN PTAGTVNSVE 180 HTAKQRYYSV MTHNR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-42	32	144	2	114	LOB family transfactor Ramosa2.1
5ly0_B	5e-42	32	144	2	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021684825.1	1e-71	LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-61	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A1Q3B3W3	5e-70	A0A1Q3B3W3_CEPFO; DUF260 domain-containing protein
STRING	evm.model.supercontig_19.92	3e-70	(Carica papaya)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	5e-60	LOB domain-containing protein 13

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]