PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045603-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 167aa    MW: 18405.1 Da    PI: 8.3481
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045603-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.41.5e-40121111100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+lrr+Ca++C+l+pyf   +p+kfanvhk+FGasnv+k+lk++pe++r +a++slvyeA+ar+ dPvyG++g+i +lq+q++ l++e
  PSME_00045603-RA  12 PCAACKLLRRRCAQGCPLSPYFSPVEPEKFANVHKVFGASNVSKMLKEVPESQRAEAANSLVYEANARLGDPVYGSTGTIYSLQRQVQVLQVE 104
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       l+++++e
  PSME_00045603-RA 105 LNAVRAE 111
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.1811112IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-4012109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MGAPAAINTI TPCAACKLLR RRCAQGCPLS PYFSPVEPEK FANVHKVFGA SNVSKMLKEV  60
PESQRAEAAN SLVYEANARL GDPVYGSTGT IYSLQRQVQV LQVELNAVRA EVMRYKYKYR  120
DPVLQPPVLA LYDVCSDDCM VTNPTAGTVN SVDHTVKQGY YSFINHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-4331152114LOB family transfactor Ramosa2.1
5ly0_B1e-4331152114LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006843741.23e-63LOB domain-containing protein 15
RefseqXP_022743509.13e-63LOB domain-containing protein 15-like
SwissprotQ9AT611e-53LBD13_ARATH; LOB domain-containing protein 13
TrEMBLW1PCQ74e-62W1PCQ7_AMBTC; Uncharacterized protein
STRINGERN054167e-63(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.13e-53LOB domain-containing protein 15
Publications ? help Back to Top
  1. Cho C,Jeon E,Pandey SK,Ha SH,Kim J
    LBD13 positively regulates lateral root formation in Arabidopsis.
    Planta, 2019. 249(4): p. 1251-1258
    [PMID:30627888]