PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045606-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 260aa    MW: 29470.7 Da    PI: 10.4379
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045606-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.84.3e-172168148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+eEd++l ++v+++G g W +  ++ g++R++k+c++rw++yl
  PSME_00045606-RA 21 RGAWTAEEDLILCEYVRLHGDGGWQKLRQKAGLKRCGKSCRLRWRNYL 68
                      89*********************************************7 PP
2Myb_DNA-binding461.2e-1474118147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg+ +  E+el+++ +++lG++ W++Ia +++ gRt++++k++w+ +
  PSME_00045606-RA  74 RGNISYHEEELIIRMHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNFH 118
                       6788899***************.*********.***********966 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.2E-221371IPR009057Homeodomain-like
PROSITE profilePS5129423.231672IPR017930Myb domain
SuperFamilySSF466891.48E-2720115IPR009057Homeodomain-like
SMARTSM007172.0E-132070IPR001005SANT/Myb domain
PfamPF002499.8E-162168IPR001005SANT/Myb domain
CDDcd001671.71E-102368No hitNo description
Gene3DG3DSA:1.10.10.608.6E-2272121IPR009057Homeodomain-like
PROSITE profilePS5129415.21573123IPR017930Myb domain
SMARTSM007172.9E-1273121IPR001005SANT/Myb domain
PfamPF002492.7E-1274117IPR001005SANT/Myb domain
CDDcd001676.47E-1081116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MRKKIFDMGR SPCWSKEVLN RGAWTAEEDL ILCEYVRLHG DGGWQKLRQK AGLKRCGKSC  60
RLRWRNYLRP DIKRGNISYH EEELIIRMHR LLGNRWSLIA GRLPGRTDNE IKNYWNFHMR  120
QNGVQLQAKA QSLKKRPKSP PPFENHVSRA IPLKIKPNCS NGYGSTTNIP TSDVSLTFSN  180
IRETTNSSKS GGCILGNDSI TEGGSKLMAF GMVDVNLAQT EDRISVTLIS SLPDQKSRPS  240
NDHFAGHEAI VDDRPVLSRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-241912125126MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132138LKKRPKS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By nitrogen, salicylic acid, NaCl and abscisic acid (ABA). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:18541146, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015954738.13e-61transcription factor MYB8-like
RefseqXP_025677071.13e-61transcription factor MYB8-like
SwissprotQ9S9K93e-54MYB3_ARATH; Transcription factor MYB3
TrEMBLF8TJT09e-82F8TJT0_PINRE; MYB-like protein (Fragment)
STRINGXP_002527968.19e-60(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-56myb domain protein 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  3. Wada T,Hayashi N,Tominaga-Wada R
    Root hair formation at the root-hypocotyl junction in CPC-LIKE MYB double and triple mutants of Arabidopsis.
    Plant Signal Behav, 2015. 10(11): p. e1089372
    [PMID:26339713]
  4. Wada T,Tominaga-Wada R
    CAPRICE family genes control flowering time through both promoting and repressing CONSTANS and FLOWERING LOCUS T expression.
    Plant Sci., 2015. 241: p. 260-5
    [PMID:26706076]
  5. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  6. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  7. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]