PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045697-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 377aa    MW: 43307.8 Da    PI: 6.1511
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045697-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.72e-18115168356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       k+++++ +q++ Le+ Fe ++++  e++ +LA++lgL  rqV vWFqNrRa++k
  PSME_00045697-RA 115 KKRRLSVQQVRSLEKTFEVENKLEPERKLQLAQELGLHPRQVAVWFQNRRARWK 168
                       566899***********************************************9 PP
2HD-ZIP_I/II125.82e-40115205292
       HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                       kkrrls +qv++LE++Fe e+kLeperK +la+eLgl+prqvavWFqnrRAR+ktkqlE+dy +Lk++y+ lk++ e++++++++L++el+
  PSME_00045697-RA 115 KKRRLSVQQVRSLEKTFEVENKLEPERKLQLAQELGLHPRQVAVWFQNRRARWKTKQLERDYGQLKHNYECLKSNFEAIKQDNQKLASELN 205
                       9**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-1998171IPR009057Homeodomain-like
SuperFamilySSF466892.25E-19109172IPR009057Homeodomain-like
PROSITE profilePS5007117.572110170IPR001356Homeobox domain
SMARTSM003895.3E-17113174IPR001356Homeobox domain
CDDcd000861.94E-15115171No hitNo description
PfamPF000469.4E-16115168IPR001356Homeobox domain
PRINTSPR000311.5E-5141150IPR000047Helix-turn-helix motif
PROSITE patternPS000270145168IPR017970Homeobox, conserved site
PRINTSPR000311.5E-5150166IPR000047Helix-turn-helix motif
PfamPF021836.9E-15170210IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MACKLPISAV LCWFWKWLGH LFPRPPHACR GSLPYGFALL APGEWKSKLG RSLRMRITTR  60
RRRRSLEESM TMTKMETTGA LKFSIPSPLA GCPGNIHDEE EEDEEECSAA GQQAKKRRLS  120
VQQVRSLEKT FEVENKLEPE RKLQLAQELG LHPRQVAVWF QNRRARWKTK QLERDYGQLK  180
HNYECLKSNF EAIKQDNQKL ASELNYLKEK WEETQKLQSL HNTDLSQAKE ENIISGMGED  240
NTIPDTKSLD RAAMVCKQDV DAEIKVSSLA MLFKEKIEGS ESESSGIVNE HADNNNNNSF  300
HSIDSHISNC YYAPVASVSD EGLMEALCPR TLIRPKEEQQ HHQDFRADAA NFVQEDPACN  360
FFDVDDATVN LPWWEWP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162170RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1187950.0BT118795.1 Picea glauca clone GQ04010_F10 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.12e-41homeobox protein 6