PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045834-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family CO-like
Protein Properties Length: 444aa    MW: 49567 Da    PI: 4.7286
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045834-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box25.92.1e-0881125341
          zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                        ++C+ +e+ ++   C+ +   lC +C + +H+       H++ p
  PSME_00045834-RA  81 VWVCEVCEQAPAVVTCKADAAALCVSCDTDIHSAnplasrHERAP 125
                       689*****************************6678888888766 PP
2CCT691.2e-23377420144
               CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                       Rea++lRY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  PSME_00045834-RA 377 REARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRT 420
                       9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003360.0643676IPR000315B-box-type zinc finger
CDDcd000213.38E-54083No hitNo description
SMARTSM003367.5E-1579126IPR000315B-box-type zinc finger
PROSITE profilePS5011910.42479126IPR000315B-box-type zinc finger
PfamPF006436.9E-780125IPR000315B-box-type zinc finger
CDDcd000217.00E-882126No hitNo description
PfamPF062032.1E-17377419IPR010402CCT domain
PROSITE profilePS5101716.797377419IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MVKEEDKDWQ NVGEWERGSQ VDHKEFLRGI GGWRMSMPKL CDVCQASNSV LYCRAHPAQL  60
CLVCDVKIHG GSKASLCHER VWVCEVCEQA PAVVTCKADA AALCVSCDTD IHSANPLASR  120
HERAPVIPFY ECPNMPNNNT GTNVNNDNLD CNVLLNEDGG GDDPLKHDYV DDDYDDYDDD  180
ENDHNNLLNH PEDDNDAEIC CAEEAATASW LIPEANRNNL TIINGGNSEG EDKMVKDKLK  240
FKAYMQSIDF LQDVDNYVDL EYLGTTTTMT TPTTPTAHMG ADSMVPVHTP EVIDHSSTKV  300
SIETAGPLDV EAASKCNYFY RTTSLNHCVS SSSMDIGIVP DSNTTTDSST PYHDPRGVFE  360
IPHRVVHPGG QVELMGREAR VLRYREKRKN RRFEKTIRYA SRKAYAETRP RIKGRFAKRT  420
DAEVEQIYSS SLLPDQGYGV VPSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1135470.0BT113547.1 Picea glauca clone GQ03412_N02 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB3VTV20.0B3VTV2_PICAB; Constans-like protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.15e-39CONSTANS-like 3