PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045872-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LSD
Protein Properties Length: 178aa    MW: 18792.8 Da    PI: 8.247
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045872-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD141.12.8e-137498125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCrtlL YP GAp+V+Ca+C+tV
  PSME_00045872-RA 74 CSGCRTLLVYPQGAPNVCCAVCNTV 98
                      ************************9 PP
2zf-LSD130.75.1e-10116136525
           zf-LSD1   5 rtlLsYPrGApsVRCalCdtV 25 
                       +tlL+Y rGA+sV+C++C tV
  PSME_00045872-RA 116 HTLLMYARGATSVQCSCCSTV 136
                       89*****************99 PP
3zf-LSD140.44.9e-13150174125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       C +C  +L+YP+GAps++CalC++V
  PSME_00045872-RA 150 CRNCFMTLMYPYGAPSIKCALCHFV 174
                       99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010533.4E-1371101IPR005735Zinc finger, LSD1-type
PfamPF069433.3E-127498IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.2E-9110138IPR005735Zinc finger, LSD1-type
PfamPF069438.9E-9112136IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.2E-9147177IPR005735Zinc finger, LSD1-type
PfamPF069433.5E-12150174IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MLSGGYSNRS DTTPVNNESA NAPIGSAPAR INSIQNNNPG AVRLGWGTMP LNMNPYPPQP  60
MPLPPPNGQG QLVCSGCRTL LVYPQGAPNV CCAVCNTVTA VPPGAEMARL ICGRFHTLLM  120
YARGATSVQC SCCSTVNLAM EANQVAHVNC RNCFMTLMYP YGAPSIKCAL CHFVTNVG
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0717601e-176BT071760.1 Picea sitchensis clone WS0452_N14 unknown mRNA.
GenBankEF0847061e-176EF084706.1 Picea sitchensis clone WS02727_J11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006847710.14e-59protein LSD1 isoform X1
RefseqXP_010269986.15e-59PREDICTED: protein LSD1
RefseqXP_010269987.15e-59PREDICTED: protein LSD1
RefseqXP_010269988.15e-59PREDICTED: protein LSD1
RefseqXP_011624573.14e-59protein LSD1 isoform X1
SwissprotQ93ZB12e-55LOL1_ARATH; Protein LOL1
TrEMBLA9NTQ61e-92A9NTQ6_PICSI; Uncharacterized protein
STRINGERN092912e-58(Amborella trichopoda)
STRINGXP_010269986.12e-58(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.32e-42lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]