PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045928-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 196aa    MW: 22125.1 Da    PI: 9.0165
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045928-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.64.5e-162067148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+W++eEde l+ +++ +G g+W++ ++  g+ R++k+c++rw +yl
  PSME_00045928-RA 20 KGAWSKEEDEVLISYIEAHGQGCWRSLPKAAGLQRCGKSCRLRWINYL 67
                      79********************************************97 PP
2Myb_DNA-binding605.2e-1973117147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       rg +++eEdel+++++ +lG++ W+ Ia+t++ gRt++q+k++w+++
  PSME_00045928-RA  73 RGDFSQEEDELIIKLHSRLGNK-WSMIASTIP-GRTDNQIKNYWNTH 117
                       899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.2E-251170IPR009057Homeodomain-like
PROSITE profilePS5129416.1511567IPR017930Myb domain
SuperFamilySSF466892.54E-3018114IPR009057Homeodomain-like
SMARTSM007174.4E-121969IPR001005SANT/Myb domain
PfamPF002491.6E-142067IPR001005SANT/Myb domain
CDDcd001671.71E-102267No hitNo description
PROSITE profilePS5129428.26168122IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-2871122IPR009057Homeodomain-like
SMARTSM007178.5E-1672120IPR001005SANT/Myb domain
PfamPF002497.0E-1673117IPR001005SANT/Myb domain
CDDcd001674.24E-1276118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGSHRDMGRS PCCEKAHTRK GAWSKEEDEV LISYIEAHGQ GCWRSLPKAA GLQRCGKSCR  60
LRWINYLRPD LKRGDFSQEE DELIIKLHSR LGNKWSMIAS TIPGRTDNQI KNYWNTHIKK  120
KLLKEGVDPY THLPIIPDHG SFGFSSGNPV LPKRGCKPSE TPGTYLGQRI SSTGHDHAYD  180
EDVNLDLSIT LPSLRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-272012227128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light, UV, cold, drought, ethylene, jasmonic acid (JA), salicylic acid (SA), abscisic acid (ABA), cadmium (CdCl(2)), high salt (NaCl), and cytokinins. {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008781556.19e-80myb-related protein 308-like
RefseqXP_010930777.12e-79myb-related protein 308
SwissprotO496087e-77MYB32_ARATH; Transcription factor MYB32
TrEMBLA0A2H3XBZ62e-78A0A2H3XBZ6_PHODC; myb-related protein 308-like
TrEMBLA0A3S3NKR83e-78A0A3S3NKR8_9MAGN; Myb-related protein 308-like protein
STRINGERM938828e-79(Amborella trichopoda)
STRINGXP_008781556.13e-79(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.13e-79myb domain protein 32
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Lotkowska ME, et al.
    The Arabidopsis Transcription Factor MYB112 Promotes Anthocyanin Formation during Salinity and under High Light Stress.
    Plant Physiol., 2015. 169(3): p. 1862-80
    [PMID:26378103]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]