PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00045939-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 229aa    MW: 25467 Da    PI: 10.1032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00045939-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-1260110255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+G r+++ +g+++AeIrd    g + + ++lg f  aeeAa  +++a++  +g
  PSME_00045939-RA  60 RYRGLRRRP-WGKFAAEIRDS---GrRGAPVWLGPFKMAEEAAMDYDKAALLNRG 110
                       8********.**********4...5444*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.41E-2259119No hitNo description
Gene3DG3DSA:3.30.730.106.4E-2460118IPR001471AP2/ERF domain
PROSITE profilePS5103219.55960118IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-1760120IPR016177DNA-binding domain
SMARTSM003803.6E-2460124IPR001471AP2/ERF domain
PfamPF008471.0E-760106IPR001471AP2/ERF domain
PRINTSPR003671.0E-96172IPR001471AP2/ERF domain
PRINTSPR003671.0E-9100120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MILFQLLNEP ATNLGWTAIH NQQEMAILGA TGSTAYTPAI CNTKMTRAQG EAAEKPSTKR  60
YRGLRRRPWG KFAAEIRDSG RRGAPVWLGP FKMAEEAAMD YDKAALLNRG TRASLNFPIE  120
VVTNALADTT EKWSSKLISS RQKQKQKQKH IKVSHHHIEL RNKMDAPDAG STIGVDFSKD  180
DGMSSMSQKI RSSDDIHRVE FVLESPPPEK HFICSAASGL VNETKIIYA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2259121163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A2e-2259121466ATERF1
3gcc_A2e-2259121466ATERF1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.12e-25ethylene-responsive element binding factor 15