PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00045971-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

LBD

Protein Properties

Length: 178aa MW: 19993 Da PI: 9.2045

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00045971-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	35.2	3.4e-11	25	62	8	45
DUF260 8 lrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkl 45 + +kC+++Cvlapyfp ++++k+ +h++FG+ +v+ l PSME_00045971-RA 25 QHKKCSEKCVLAPYFPLDDSQKLMLLHRVFGNGHVMDL 62 789*****************************999875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.806	17	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-8	25	62	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MSGYGKYCSG GRDGVHIFLR CLQDQHKKCS EKCVLAPYFP LDDSQKLMLL HRVFGNGHVM 60 DLPAGQTQIF RLGKHSEHGV RNKPKTSRSC TWLSHCVGVI NDLQQSVAEL QLQLDSTRAQ 120 AQLASINLSH ANLSSQVTSS REVLITKYHE ALMVPHFVRC LTQCRRVKSH INNSTCFS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LP64	7e-20	B8LP64_PICSI; Uncharacterized protein
TrEMBL	B8LQI9	9e-20	B8LQI9_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	1e-14	LOB domain-containing protein 1