PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046045-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 174aa    MW: 19670.2 Da    PI: 5.2705
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046045-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601315.1e-41141131100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk+++rkC+++C lapyfp+++p+kf  vh+lFG  +v+kll++lpee+r da+sslvyeA+ar+ dPv+G++gvi+++++++e+l+++
  PSME_00046045-RA  14 ACAACKFQKRKCSEKCLLAPYFPHNDPNKFLLVHRLFGYGHVVKLLQKLPEEQRGDAVSSLVYEAKARVADPVHGCAGVINDMHKKIEELESQ 106
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la+++++
  PSME_00046045-RA 107 LASTQAK 113
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.81313114IPR004883Lateral organ boundaries, LOB
PfamPF031952.7E-3914111IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MLQIMSQSFR AETACAACKF QKRKCSEKCL LAPYFPHNDP NKFLLVHRLF GYGHVVKLLQ  60
KLPEEQRGDA VSSLVYEAKA RVADPVHGCA GVINDMHKKI EELESQLAST QAKLDNITLE  120
QSNIFSILIN AAGYHQGWDA NFYSASQQES RDTEYSNPPV LDEEVDSMEF IWEA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A7e-33111148111LOB family transfactor Ramosa2.1
5ly0_B7e-33111148111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019447910.12e-47PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR03e-44LBD1_ARATH; LOB domain-containing protein 1
TrEMBLB8LQI96e-57B8LQI9_PICSI; Uncharacterized protein
STRINGXP_004487250.11e-45(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-46LOB domain-containing protein 1