PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046046-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 172aa    MW: 19307.1 Da    PI: 6.1377
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046046-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260127.37.3e-40111101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++++kC+++Cvlapyfp+++p+kf  vh+lFG  +v+++l++lp+e+r da+sslvyeA+ar+ dPv+G+v+vi++l+ ++ q++++
  PSME_00046046-RA  11 ACAACKFQKKKCSEKCVLAPYFPQNDPNKFLLVHRLFGHGHVVRILQDLPTEQRGDAVSSLVYEARARVADPVHGCVAVINNLHIKIVQMQSQ 103
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la+++++
  PSME_00046046-RA 104 LASAEAK 110
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.91610111IPR004883Lateral organ boundaries, LOB
PfamPF031955.9E-3811108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
IMSQVSKAES ACAACKFQKK KCSEKCVLAP YFPQNDPNKF LLVHRLFGHG HVVRILQDLP  60
TEQRGDAVSS LVYEARARVA DPVHGCVAVI NNLHIKIVQM QSQLASAEAK LANINLQHAN  120
ILTLMSEYHQ VWDPNFYSAS PQESEDTQYM SPPILDDAIV DPMELWEIST WS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3281118111LOB family transfactor Ramosa2.1
5ly0_B2e-3281118111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LP641e-63B8LP64_PICSI; Uncharacterized protein
TrEMBLB8LQI92e-63B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.17e-37LOB domain-containing protein 1