PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046052-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 397aa    MW: 44446.5 Da    PI: 4.6982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046052-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.74.4e-16213261355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       +kG+r ++ +g+Wv+eIr+p++   r +++lg++ taeeAa+a +aa+ +l+g
  PSME_00046052-RA 213 FKGIRLRE-WGKWVSEIRVPKS---REKIYLGSYKTAEEAARAFDAAMFCLRG 261
                       8*****99.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-6935IPR001471AP2/ERF domain
SMARTSM003801.4E-29212275IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.0E-27212270IPR001471AP2/ERF domain
CDDcd000183.82E-27212270No hitNo description
PROSITE profilePS5103219.888212269IPR001471AP2/ERF domain
PRINTSPR003671.0E-6213224IPR001471AP2/ERF domain
PfamPF008471.4E-7213261IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-18213271IPR016177DNA-binding domain
PRINTSPR003671.0E-6235251IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MHRERRYIPE RAARAFDAAS YCLRGPDAKF NFPDSVQSIP FASSLSRQQI QSVAAEYALK  60
KLSLSSPSRQ HNIDNQSEEK PSMSSSVVTA KYPLNELPST FPSLPHNINN NNKEDLAQTS  120
SVSEMEFSSA NGQPKSEELA FWKFHLNLEK IPSIDEALAL EFILTSQLEE EVNLSVNSTT  180
LWNFEDKPSQ QHEHTNAHAP PNEDVLQTSR MQFKGIRLRE WGKWVSEIRV PKSREKIYLG  240
SYKTAEEAAR AFDAAMFCLR GSNAKFNFPN SIPSIPSASS LSRKQIQVVA AKYALNELPS  300
TLPSFPHNID NNNKEEPAQT SSVSEMEFSS ADGQPMSEEL AFWKSVFAGS DGTECLNLEK  360
IPSIDEALAL QFIPTSQLEE EVDLSVDSTA LWNFEDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5ADJ93e-61D5ADJ9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.12e-22ERF family protein