PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046132-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 175aa    MW: 19697.9 Da    PI: 10.0655
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046132-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox52.21.1e-162585257
                      T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      ++R+++++eq+++Le+   + + +p  +e+++++++l    ++ e++V++WFqNr+ + k+
  PSME_00046132-RA 25 KPRWNPKPEQIRILEAIVDSgTVNPPIDEITRITTQLqefgQVGEANVFYWFQNRKSRTKQ 85
                      89*****************99*************************************996 PP
2Wus_type_Homeobox104.28.4e-342587365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+P+peQi+iLe++ +sG+++P+ +ei+rit++L+e+G+++++NVfyWFQNrk+R +q+q
   PSME_00046132-RA 25 KPRWNPKPEQIRILEAIVDSGTVNPPIDEITRITTQLQEFGQVGEANVFYWFQNRKSRTKQRQ 87
                       78***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.5882186IPR001356Homeobox domain
SuperFamilySSF466891.2E-122191IPR009057Homeodomain-like
SMARTSM003893.9E-52390IPR001356Homeobox domain
CDDcd000867.78E-42487No hitNo description
Gene3DG3DSA:1.10.10.602.0E-72491IPR009057Homeodomain-like
PfamPF000462.7E-142585IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MGTVIPIKNS GTQLQRDEGS PPGPKPRWNP KPEQIRILEA IVDSGTVNPP IDEITRITTQ  60
LQEFGQVGEA NVFYWFQNRK SRTKQRQRQL QASERNKSRE ARTSMNVGNT KANSLRNNGE  120
SSYSSAMPAA SLYMHQDHHS YHRVQVNEET HIDRSSHIQA LAPAHGTCPN TTVQV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027743.15e-33PREDICTED: WUSCHEL-related homeobox 9
TrEMBLR9R8331e-72R9R833_PICAB; WUSCHEL homeobox protein WOX8A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-24homeobox-3