PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046249-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 414aa MW: 47691.1 Da PI: 4.8839

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046249-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	19	2.5e-06	74	120	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + Er RR+r++ +L +llP+ s Kl+ e+A++YIk+L PSME_00046249-RA 74 SQILEERLRRKRMKCLCIQLESLLPST----SVKLDRCGLFEEAINYIKKL 120 55667*******************9....8***************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	8.08E-6	68	122	No hit	No description
PROSITE profile	PS50888	12.493	70	120	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-8	70	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.23E-9	71	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.2E-4	76	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF53756	4.04E-19	222	312	No hit	No description
SuperFamily	SSF53756	4.04E-19	353	409	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MAFDCLFLSS YPASMKTEYS SVTQQDRQLD CRVTASRKRR PSEVASLDLQ DCNDLLEIVW 60 QDVDQMTKVS KKESQILEER LRRKRMKCLC IQLESLLPST SVKLDRCGLF EEAINYIKKL 120 NENMHHLKRK RDSLLPIQTE NTTGKNIDIN VAVKFYCREA IISIISQRRP RYMWRILEEI 180 ENHGLDVETS QLFSGESFVL LYYHLSLRDN ISLDPAQIQT SLEYFAKPLE FDERGSNILQ 240 NVTTLEHASV NEGKHEEVQE IEYESVAKNS TSKQSKGDYV LVNTFEELEG RVQGRSNSTV 300 FERLSCLGGG GRDCPDLIER WEARNRKINE NIVNSEPLFL PNFLEGRASC CNLWEEEKSF 360 LTWLDMQQVA SVIYVSFGSI TVKSEEQLEQ LALGLEGSGQ PFLWVLRVDT AELL

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MAFDCLFLSS YPASMKTEYS SVTQQDRQLD CRVTASRKRR PSEVASLDLQ DCNDLLEIVW  60
QDVDQMTKVS KKESQILEER LRRKRMKCLC IQLESLLPST SVKLDRCGLF EEAINYIKKL  120
NENMHHLKRK RDSLLPIQTE NTTGKNIDIN VAVKFYCREA IISIISQRRP RYMWRILEEI  180
ENHGLDVETS QLFSGESFVL LYYHLSLRDN ISLDPAQIQT SLEYFAKPLE FDERGSNILQ  240
NVTTLEHASV NEGKHEEVQE IEYESVAKNS TSKQSKGDYV LVNTFEELEG RVQGRSNSTV  300
FERLSCLGGG GRDCPDLIER WEARNRKINE NIVNSEPLFL PNFLEGRASC CNLWEEEKSF  360
LTWLDMQQVA SVIYVSFGSI TVKSEEQLEQ LALGLEGSGQ PFLWVLRVDT AELL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	B8LMX6	1e-100	B8LMX6_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65320.1	5e-06	bHLH family protein