PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046271-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 450aa MW: 50533.1 Da PI: 6.2548

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046271-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	417	3.4e-128	227	443	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc+rpaqg++w+qdycs fh tla neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgipecegaatakspwna PSME_00046271-RA 227 PPPAAFLGPKCALWDCSRPAQGTKWCQDYCSDFHMTLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGIPECEGAATAKSPWNAY 319 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rew+ffdkp+r fesgnrkqrslpdysgrgwhesrkqvmk+fgglkrsyymdpqps++fewhlyeyein++da+alyrle PSME_00046271-RA 320 ELFDMYVLEGESMREWIFFDKPQRDFESGNRKQRSLPDYSGRGWHESRKQVMKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLE 412 ***************************************************************************************** PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00046271-RA 413 LKMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 443 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	1.5E-4	63	94	IPR012677	Nucleotide-binding alpha-beta plait domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MSKVGNFNSG ISFTMSRSPE ALRACCDDKQ AGKRAGSSSM DLIFVQMGSG KRYFHGLFPW 60 PYQYVDYHMG AESGYVRFEQ PEMVQKPRAA AILVEEWGVK LRRNTGLSSM KVKISVGNLQ 120 ATVGEEKDFE RVSRCTNIGE GLHQNSYPQT SVQLPANIEH QENNNYVQTS EQLPPKLVEG 180 LEVTSRLEGG QINFHQDYIP AAQPIFTLTG EEETSPFFNG PQPGLCPPPA AFLGPKCALW 240 DCSRPAQGTK WCQDYCSDFH MTLASNEGAP GMRPVLRPGG IDLKDGPLFA ALSAKTQEKA 300 VGIPECEGAA TAKSPWNAYE LFDMYVLEGE SMREWIFFDK PQRDFESGNR KQRSLPDYSG 360 RGWHESRKQV MKDFGGLKRS YYMDPQPSTQ FEWHLYEYEI NDCDACALYR LELKMVCSKK 420 NTKGKVGGDP LVDLQHQLGK LSAEFSWVEK

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MSKVGNFNSG ISFTMSRSPE ALRACCDDKQ AGKRAGSSSM DLIFVQMGSG KRYFHGLFPW  60
PYQYVDYHMG AESGYVRFEQ PEMVQKPRAA AILVEEWGVK LRRNTGLSSM KVKISVGNLQ  120
ATVGEEKDFE RVSRCTNIGE GLHQNSYPQT SVQLPANIEH QENNNYVQTS EQLPPKLVEG  180
LEVTSRLEGG QINFHQDYIP AAQPIFTLTG EEETSPFFNG PQPGLCPPPA AFLGPKCALW  240
DCSRPAQGTK WCQDYCSDFH MTLASNEGAP GMRPVLRPGG IDLKDGPLFA ALSAKTQEKA  300
VGIPECEGAA TAKSPWNAYE LFDMYVLEGE SMREWIFFDK PQRDFESGNR KQRSLPDYSG  360
RGWHESRKQV MKDFGGLKRS YYMDPQPSTQ FEWHLYEYEI NDCDACALYR LELKMVCSKK  420
NTKGKVGGDP LVDLQHQLGK LSAEFSWVEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-137	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-124	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-136	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-136	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-126	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]