PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046305-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 201aa    MW: 22314.6 Da    PI: 10.5844
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046305-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.3e-143685254
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54
                      +y+G r++  +g+++AeIrd    g + ++++lg+f t eeAa a+++a++ ++
  PSME_00046305-RA 36 RYRGLRRRL-WGKFAAEIRDS---GrRGAQVWLGTFKTTEEAAMAYDKAALLIR 85
                      8*****777.**********4...5444*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.90E-243595No hitNo description
PfamPF008471.6E-103682IPR001471AP2/ERF domain
SMARTSM003806.6E-2836100IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-273694IPR001471AP2/ERF domain
SuperFamilySSF541711.63E-193696IPR016177DNA-binding domain
PROSITE profilePS5103221.0613694IPR001471AP2/ERF domain
PRINTSPR003671.0E-83748IPR001471AP2/ERF domain
PRINTSPR003671.0E-86076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MAIPGATGST AYTPAICNTK MTRAQGEAAE KPSTKRYRGL RRRLWGKFAA EIRDSGRRGA  60
QVWLGTFKTT EEAAMAYDKA ALLIRRTRAS LNFPIEVVTN ALADTTEKWS SKLISSRKKQ  120
KHIKVSHHHI ELRKKMDAPD AGSTIGVDFS KDDGMSSMSQ KIRSSDDIHR VDFVLESPPL  180
EKRFICSAAS GLVNETKIIY A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-233597466ATERF1
3gcc_A3e-233597466ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009346221.11e-28PREDICTED: ethylene-responsive transcription factor ERF091-like
TrEMBLA0A0L9VF915e-27A0A0L9VF91_PHAAN; Uncharacterized protein
TrEMBLA0A0S3S2T25e-27A0A0S3S2T2_PHAAN; Uncharacterized protein
STRINGXP_009346221.14e-28(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.13e-25ethylene-responsive element binding factor 13