PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046307-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 309aa    MW: 33823.8 Da    PI: 9.2824
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046307-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.99.8e-05202307348
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...............................................................TT CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkas............................................................kaps 35 
                        +h+ +Er  R++i +++  L++l+P +s                                                              ++
  PSME_00046307-RA 202 NSHSLAERVKREKISERMKFLQDLVPGCSkflsmklaavnprmefnvegilskdmlqsqgssptmvfssdtstsypqlhqpqqglvqigTKGH 294
                       58*************************988888888888888888888888888888888888888877777777777777777777776777 PP

                       S-STCHHHHHHHH CS
               HLH  36 kKlsKaeiLekAv 48 
                       + ++ ae L++++
  PSME_00046307-RA 295 GIVNQAEALRRTI 307
                       7777777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.07E-7196231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508888.924199260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-6202231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MGGGSLNLSE SAGAPFHRSV IDNYAMSRIP RPNMDELTKV SDTSLSKEEV CAAETGVRKA  60
GRMSRSSTPG HGTSGNESDD AEVSTAHEES SSFDQNTSEA APNAFNGRKR KQMQKDKGKD  120
FASLQAEKET QITEVVDGLK GMKYKTVEGV KEKDDVKYKA EQNASAKIGE GSPKQAKDNI  180
QTSEPPKEDY IHVRARRRQA TNSHSLAERV KREKISERMK FLQDLVPGCS KFLSMKLAAV  240
NPRMEFNVEG ILSKDMLQSQ GSSPTMVFSS DTSTSYPQLH QPQQGLVQIG TKGHGIVNQA  300
EALRRTINA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1131510.0BT113151.1 Picea glauca clone GQ03326_F21 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LLM21e-82B8LLM2_PICSI; Uncharacterized protein
STRINGXP_010261463.11e-58(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.33e-40bHLH family protein