PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046384-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 228aa    MW: 25050.2 Da    PI: 9.2735
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046384-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM28.83.6e-09631126
               NAM  1 lppGfrFhPtdeelvveyLkkkvegk 26
                      lppGfrFhPtd+el+++yLk k+++ 
  PSME_00046384-RA  6 LPPGFRFHPTDKELISCYLKGKLTHG 31
                      79******************998764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-9331IPR003441NAC domain
PfamPF023651.1E-6748IPR003441NAC domain
PfamPF021717.0E-661100IPR003165Piwi domain
SuperFamilySSF549281.34E-699146IPR012677Nucleotide-binding alpha-beta plait domain
Gene3DG3DSA:3.30.70.3301.1E-499146IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0000166Molecular Functionnucleotide binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MGTFVLPPGF RFHPTDKELI SCYLKGKLTH GLKASSRARA YYRGGPFDSQ IHVILQNNGG  60
LKPICETDLG LVSECCLTKH VFKLRKQYLA NVALKINVKV VYCRVCGDPN SVLRFAFVEF  120
TDQESARAAL SRTMLGFYPV RVLLSKTVIL QVNPTFLPSA SNVLSKLGCL RVKKIPPQLA  180
SATLALEREV PPISAIENPL EELMQGNERL DPVVIDSEPT NGGQGPTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3vna_A4e-174311379147Protein argonaute 1
4g0p_A3e-174311379147Protein argonaute 1
4g0q_A3e-174311379147Protein argonaute 1
4g0x_A3e-174311379147Protein argonaute 1
4g0y_A3e-174311379147Protein argonaute 1
4g0z_A3e-174311379147Protein argonaute 1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1147643e-33BT114764.1 Picea glauca clone GQ03601_M03 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018824355.19e-24PREDICTED: polyadenylate-binding protein-interacting protein 12-like isoform X2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.21e-07Arabidopsis NAC domain containing protein 87