PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046495-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 348aa    MW: 39263.6 Da    PI: 9.6388
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046495-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY91.66.2e-29160217359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        g++WrKYGqK+ k+++ prsYYrC+ a +C+vkk+v+r+a+dp++v++tYegeH+h+
  PSME_00046495-RA 160 NGFRWRKYGQKMTKSNPLPRSYYRCAWApSCTVKKQVQRCAQDPTIVITTYEGEHTHS 217
                       58************************999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.2E-29148217IPR003657WRKY domain
SuperFamilySSF1182901.31E-25152218IPR003657WRKY domain
PROSITE profilePS5081126.119153219IPR003657WRKY domain
SMARTSM007742.4E-31158218IPR003657WRKY domain
PfamPF031065.6E-24160216IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MQAITMLVAE MNLISEENRT LKSTLKRMSR KYNNLQKHIM SLVEQRKDVD GNQIDRQGND  60
VLYARYSSGA VDPQYGQYWA DCYERGWELR EKKSIAKFMD DQELYYSKKR TMNYIETAQS  120
ENRINSSLIK KHHALSSVSA AVPKRIVCRR TSYEAAVRGN GFRWRKYGQK MTKSNPLPRS  180
YYRCAWAPSC TVKKQVQRCA QDPTIVITTY EGEHTHSLSP LAMAAMHAGS SNQLIGGFTN  240
KDNLVAENNF IPYISTISTS TLFPATITLD FTDNRPNSGL QLQPPDLTAG SFHHSSPFRK  300
NMGQAVDHLS IIQDYVASIK TDPNFTSVLA RAIAGSLLCL GAPVQEIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-21150218976Probable WRKY transcription factor 4
2lex_A4e-21150218976Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-122A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.12e-39WRKY family protein