PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046519-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 60aa    MW: 6884.87 Da    PI: 11.2696
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046519-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.11.2e-089475494
               NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                      ++ +w+fF+++++k+    r+nr tksgy katg+d+++++
  PSME_00046519-RA  9 GDGQWFFFVPSHQKKC--VRPNRLTKSGYSKATGSDRKIHR 47
                      5679*******99875..7********************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.116160IPR003441NAC domain
SuperFamilySSF1019413.92E-7850IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 60 aa     Download sequence    Send to blast
MRGLVRDVGD GQWFFFVPSH QKKCVRPNRL TKSGYSKATG SDRKIHRPGL LPQWFSGSEH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.24e-09NAC domain containing protein 35