PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046595-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 222aa    MW: 25131.2 Da    PI: 8.8066
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046595-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.81.5e-16115198190
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       f+k l++s+v++  +l lp +f+++h  k  + + ++lede+g + +  +i  +++    l++GWk F+ +++L++gD +vF+l++ ++f
  PSME_00046595-RA 115 FIKSLVRSHVSSCFWLGLPTDFCRKHLPK--KYTSMVLEDEKGAECDAVFIAVRTG----LSGGWKAFALDHNLDDGDALVFELVEPTRF 198
                       89************************544..4457***************776666....***********************9876666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-19109201IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.61E-22110201IPR015300DNA-binding pseudobarrel domain
CDDcd100172.01E-22113201No hitNo description
SMARTSM010199.7E-17115201IPR003340B3 DNA binding domain
PfamPF023621.5E-14115199IPR003340B3 DNA binding domain
PROSITE profilePS5086310.8115206IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
METVCNRIDC MNHCSSIVDF SFLGGWFMKD LGLSKLCQGL QAVVSASKSQ TRQVMKPRRL  60
KDEEGLPLER RYGRKQNGKN QVLHNIKLAS YEARMQAMQN AEKIVEDLGS KHPSFIKSLV  120
RSHVSSCFWL GLPTDFCRKH LPKKYTSMVL EDEKGAECDA VFIAVRTGLS GGWKAFALDH  180
NLDDGDALVF ELVEPTRFKV STPISLLIKC AYFLKFCQFL NN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024981962.18e-58putative B3 domain-containing protein At5g58280 isoform X1
SwissprotQ5KQI49e-50Y5814_ORYSJ; B3 domain-containing protein Os05g0481400
TrEMBLA0A124SCL05e-57A0A124SCL0_CYNCS; B3 DNA binding domain-containing protein
STRINGMigut.D00805.1.p1e-51(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58280.14e-42B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]