PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046682-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 268aa    MW: 29580.5 Da    PI: 10.1383
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046682-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.19e-18101150255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+G+r+++ rg+W+AeIrdp++      ++lg+f taeeAaka++a +k ++g
  PSME_00046682-RA 101 LYRGIRRRP-RGKWAAEIRDPRK---GVMVWLGTFNTAEEAAKAYDAEAKIIRG 150
                       69*******.8*********943...3**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.79E-29100160No hitNo description
PfamPF008471.2E-10101146IPR001471AP2/ERF domain
SMARTSM003801.8E-32101164IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-20101159IPR016177DNA-binding domain
PROSITE profilePS5103221.707101158IPR001471AP2/ERF domain
PRINTSPR003679.1E-9102113IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-28102159IPR001471AP2/ERF domain
PRINTSPR003679.1E-9124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSGGAKISDF IPSNRSQCVN ARSLRPDFET FARFINGEAV PESLNKSGSV DGGYKQKNTH  60
ISNLVKPKEE FSSGTENGAI SPLKDFEKYP AKSAGRKRTT LYRGIRRRPR GKWAAEIRDP  120
RKGVMVWLGT FNTAEEAAKA YDAEAKIIRG KKAKLNFPDD SCSLKMDSSK KVSGKKVKSC  180
AQNPDLSFEA FNINCKVKST SSPMPEGYYI NRQVESSLSD VCKSDLPIYG YDATEYGDSK  240
LIKPGAPFRS NSDASRVQPL KQIKLEPA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-191021601574Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261706.13e-37PREDICTED: ethylene-responsive transcription factor RAP2-12
RefseqXP_010261707.13e-37PREDICTED: ethylene-responsive transcription factor RAP2-12
STRINGXP_010261706.11e-36(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-26ethylene-responsive element binding protein