PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046701-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family AP2
Protein Properties Length: 316aa    MW: 34611.4 Da    PI: 4.9703
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046701-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP223.81.1e-0764110150
               AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaar 50 
                       s+y+G    +++g+W+A+   +   g    +++fs g+  t eeAa+a++   
  PSME_00046701-RA  64 SKYRGLAKQSQTGKWEAS---F---GrvlGNRYFSMGSCSTSEEAAAAYEMSQ 110
                       79****************...8...555446******************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.059129IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.2E-5229IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-5230IPR016177DNA-binding domain
SuperFamilySSF541711.63E-664124IPR016177DNA-binding domain
PfamPF008472.6E-464108IPR001471AP2/ERF domain
PROSITE profilePS5103210.37665123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-465115IPR001471AP2/ERF domain
SMARTSM003800.003165129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
AYDEEEAAAR AYDLAALKYW GPGTLINFLV SDYARDIEEM QSISREDFLA SLRRKSSGFS  60
RGMSKYRGLA KQSQTGKWEA SFGRVLGNRY FSMGSCSTSE EAAAAYEMSQ GEYRGFGMAR  120
NIDLSSYIRW WQPNKSLEVE PSAPRHMDES HSMSEERPTQ GDEPETPQWP GQACEPYQLP  180
SLGVPNNGKH NPSPVTALSI LHQSSSFKQM LEKASPKKGK SDKDMDAGDN PENIQLEKGK  240
GKDCLAEDPT GSKEFGCHLG SCQAPGQTST MFPFSQVQSV PPIQDCNTTA PVSDSLWTSF  300
VPTTGGVSLT NVVGIC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8173570.0KJ817357.1 Larix gmelinii var. olgensis x Larix kaempferi WRI2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A171PZK20.0A0A171PZK2_9SPER; WRI2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41710.14e-50AP2 family protein