PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046716-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 391aa    MW: 43190.8 Da    PI: 7.4988
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046716-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.29.5e-30182240259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +Dg++WrKYGqK+ k+++ prsYY+C+ a gCpvkk+v+r+aedp++v++tYegeH+h+
  PSME_00046716-RA 182 SDGCQWRKYGQKMTKNNPLPRSYYKCAGAsGCPVKKQVQRCAEDPTIVITTYEGEHTHS 240
                       6**************************988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.8E-31172240IPR003657WRKY domain
SuperFamilySSF1182902.09E-26175241IPR003657WRKY domain
PROSITE profilePS5081126.211176242IPR003657WRKY domain
SMARTSM007741.5E-35181241IPR003657WRKY domain
PfamPF031064.0E-26183239IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDDEMDGNIG FCFVQMTIVV AEIDRVNEEN RKLKSMLKIV SSQYQDLQKH ISTLVKCVDG  60
NQIFSLDQQR KSVLCIGSTN VDPGYAVTHQ SDHSFGCNKR DEQKEKKNVE RMDDCHQLPS  120
KKRKINYMQS EHGGISSSVE SDNPAGCCHR GLPNKVPSGV SNEQTATAPR RVVAMRTDNQ  180
RSDGCQWRKY GQKMTKNNPL PRSYYKCAGA SGCPVKKQVQ RCAEDPTIVI TTYEGEHTHS  240
LGPLALAAMY ASSSHHLIGE EGHRENKCIP HIARISTSSM FPTITLDLTD NRFNPGLQLQ  300
STHSTASSFR HSVPFPSDMG QISAENELDN YYSILQDFVA SIKADPNFIV ALTVAIAGSV  360
LNLQGDPIKG MMPKIPPARE CANGSTQEAL V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-191832411976Probable WRKY transcription factor 4
2lex_A6e-191832411976Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A482CVK91e-146A0A482CVK9_9SPER; WRKY164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.11e-35WRKY family protein