PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046720-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 85aa    MW: 9587.97 Da    PI: 11.4166
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046720-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.82.8e-095292248
                      T-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding 22 gtWktIartmgkgRtlkqcksrwqkyl 48
                      + W+ Ia +++ gRt++++k++w++++
  PSME_00046720-RA  5 R-WSMIAGRLP-GRTDNEIKNYWNSHM 29
                      5.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.548133IPR017930Myb domain
SuperFamilySSF466891.14E-7432IPR009057Homeodomain-like
PfamPF002492.2E-6428IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-13530IPR009057Homeodomain-like
CDDcd001676.07E-7529No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 85 aa     Download sequence    Send to blast
MHAFRWSMIA GRLPGRTDNE IKNYWNSHMR QNGVQLQAKA QSLKKRPKSP PPFENHASRA  60
IPLKIKPNCS NGYGSNTNIP TSMSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248LKKRPKS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLF8TJT04e-14F8TJT0_PINRE; MYB-like protein (Fragment)
TrEMBLK7NJK34e-15K7NJK3_PINTA; Uncharacterized protein (Fragment)
TrEMBLK7NK794e-15K7NK79_PINTA; Uncharacterized protein (Fragment)
TrEMBLK7NME84e-15K7NME8_PINTA; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-13myb domain protein 5