PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046739-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family GATA
Protein Properties Length: 336aa    MW: 35845.8 Da    PI: 6.7066
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046739-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.67e-18250284135
              GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                       Cs+C + kTp+WR gp g+ktLCnaCG+++++ +l
  PSME_00046739-RA 250 CSHCLVQKTPQWRTGPLGPKTLCNACGVRFKSGRL 284
                       *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.2E-6822335IPR016679Transcription factor, GATA, plant
SMARTSM004013.5E-15244294IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.569244280IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.65E-13245306No hitNo description
Gene3DG3DSA:3.30.50.101.4E-13248282IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.85E-13249299No hitNo description
PROSITE patternPS003440250275IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15250284IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
PVLFRASVGF EPGMESHAGG SSSEIIWSGG GGEVFRIDDL LDFSSEDIGA PIGGVGGSSS  60
HGEKSRAKLA FSERNSGDSS VTETEAAATC DEVSRPAPSV VEANDSGGGC PFSGELCMPA  120
DALEELEWLS SFVDDSFVAG PEFVVPLDYE HEPAEREESQ RKQGNTLLAG AGKTWVLGRA  180
RSKRSRSVNP AFLVSVALKN DEPQATVRET VVKGSGSACS RPPPVATVKK PKKGSHSHTK  240
SGGGQESRRC SHCLVQKTPQ WRTGPLGPKT LCNACGVRFK SGRLLPEYRP ALSPTFSSGI  300
HSNCHRRVVE IRRQKIDEQQ PFSQQETSSL TDNSMT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LKB31e-167B8LKB3_PICSI; GATA transcription factor
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45050.13e-43GATA transcription factor 2