PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046768-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 135aa    MW: 15718.5 Da    PI: 4.9004
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046768-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.29.2e-093252346
                      -HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqk 46
                      +W++Ia +++ gRt++++k++w++
  PSME_00046768-RA  3 RWSLIAGRLP-GRTDNEIKNYWNT 25
                      5*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.229131IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.5E-12327IPR009057Homeodomain-like
PfamPF002491.5E-6325IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-7335IPR009057Homeodomain-like
CDDcd001677.00E-6327No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MCRWSLIAGR LPGRTDNEIK NYWNTRLSKR VRMGELEPKF QKINKRSSDI PSSSEKEDVD  60
KENYTAQTLP LKTKAVRYSG RTVADIFKYD HVVHDTRDGI DQEEGLKVAD NDDEEIDTSK  120
SWSQLLVEDC MEDYQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2H4Z0B08e-55A0A2H4Z0B0_9SPER; R2R3 MYB transcription factor
STRINGevm.model.supercontig_96.571e-13(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.15e-14myb domain protein 3