PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046788-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ARR-B
Protein Properties Length: 559aa    MW: 61937.4 Da    PI: 6.6499
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046788-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.36.3e-27198250255
           G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       +r++Wt +LH++Fv av+qL G++kA+Pk+i+e+mkv+gL++e+v+SHLQkYRl
  PSME_00046788-RA 198 ARVHWTVQLHQQFVLAVNQL-GIDKAVPKKIVEIMKVQGLSRENVASHLQKYRL 250
                       79******************.********************************8 PP
2Response_reg64.84.3e-22311391109
                       EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
      Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealk 91 
                       vl+vd +pl + +l+++l++ +y  v++++  ++a+ ++ke++  +Dl+++D+ +p+ dG++ll+ i   + +lp+i+++++g+ + + + + 
  PSME_00046788-RA  31 VLVVDNDPLCLLVLERMLRQCNY-TVTTCSRVPQAISMVKENRdrFDLVMCDVYLPDEDGFKLLE-IVGLGLDLPVIMMSTNGDTTVVMKGIT 121
                       89*********************.***************999999******************97.6667789******************** PP

                       TTESEEEESS--HHHHHH CS
      Response_reg  92 aGakdflsKpfdpeelvk 109
                        Ga d++ Kp+ +eel++
  PSME_00046788-RA 122 HGACDYFIKPVRIEELRN 139
                       ****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.7E-12612547IPR017053Response regulator B-type, plant
SuperFamilySSF521721.71E-3227149IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.0E-3528168No hitNo description
SMARTSM004482.1E-2729141IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011039.85530145IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1931140IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.80E-2432144No hitNo description
PROSITE profilePS512949.628194253IPR017930Myb domain
SuperFamilySSF466892.15E-18195254IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-27196255IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-24198250IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MMDDAGCAVK LTEECKSMMQ IGGFSPTGLK VLVVDNDPLC LLVLERMLRQ CNYTVTTCSR  60
VPQAISMVKE NRDRFDLVMC DVYLPDEDGF KLLEIVGLGL DLPVIMMSTN GDTTVVMKGI  120
THGACDYFIK PVRIEELRNI WQHVVRRRGR ESLKDDLGEC EDREASDSPE TTSKKRKDTS  180
SGDFSDEVID DISSLKRARV HWTVQLHQQF VLAVNQLGID KAVPKKIVEI MKVQGLSREN  240
VASHLQKYRL YLKRLSGAIT EPYPVASFQA ADDSISGGKM KLQQGEKGVA SSSGAKSLNL  300
GTGVSSGLGV RGLDQSTLKS LQQYRAYQQR LVANRAQVLG GIGILHSNVS NPAKVLESTG  360
GTKSGLQRMS SIDMGLLWKA QRQEAADENE KHGIADLQKL PQKKLSSVSR EKEIVLHSSS  420
QQQRFRELHP RHSRTRTITD MPMVFQSDKP EVTFKNTLPT KSMLQDVDEL LPMEDISWLD  480
STFKPESPRG AVISFDCFVQ DFGGSSLSAA TTEESNRHAF ASTDFEGQRK TGAGNEDFIS  540
SGSTDISDYL VDDLIPHPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A4e-19197253157Transcription factor LUX
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1228040.0BT122804.1 Picea sitchensis clone WS0461_G14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024388632.11e-114two-component response regulator ORR21-like isoform X1
SwissprotB8AEH11e-90ORR23_ORYSI; Two-component response regulator ORR23
SwissprotQ6K8X61e-90ORR23_ORYSJ; Two-component response regulator ORR23
TrEMBLD5A9D60.0D5A9D6_PICSI; Uncharacterized protein
STRINGPP1S31_291V6.11e-114(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.16e-88response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]