PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00046874-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

NAC

Protein Properties

Length: 186aa MW: 20999.9 Da PI: 10.298

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00046874-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	172.9	9.9e-54	17	145	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ppGfrFhPtdeelv +yLkkk+++++l++ ++i+e+d+yk++Pw+Lp k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+ PSME_00046874-RA 17 PPGFRFHPTDEELVIHYLKKKASSTPLPV-TIIAEIDLYKFDPWELPGKANFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILT 108 9**************************.89***********999999***********************************9 PP NAM 95 k...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++++vg+kk Lvfy gr pkg kt+W+mheyrl PSME_00046874-RA 109 StlgGTQKVGVKKALVFYGGRPPKGIKTNWIMHEYRL 145 99999999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	8.24E-65	10	176	IPR003441	NAC domain
PROSITE profile	PS51005	61.511	16	175	IPR003441	NAC domain
Pfam	PF02365	1.8E-28	17	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 186 aa Download sequence Send to blast
MESPASFSGS HQQPQFPPGF RFHPTDEELV IHYLKKKASS TPLPVTIIAE IDLYKFDPWE 60 LPGKANFGEQ EWYFFSPRDR KYPNGARPNR AATSGYWKAT GTDKPILTST LGGTQKVGVK 120 KALVFYGGRP PKGIKTNWIM HEYRLADSGA RPSSFPNKKG SLRLDDWVLC RIYKKNGHSQ 180 RVQGAE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-75	13	181	14	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-75	13	181	14	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-75	13	181	14	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-75	13	181	14	171	NO APICAL MERISTEM PROTEIN
3swm_A	3e-75	13	181	17	174	NAC domain-containing protein 19
3swm_B	3e-75	13	181	17	174	NAC domain-containing protein 19
3swm_C	3e-75	13	181	17	174	NAC domain-containing protein 19
3swm_D	3e-75	13	181	17	174	NAC domain-containing protein 19
3swp_A	3e-75	13	181	17	174	NAC domain-containing protein 19
3swp_B	3e-75	13	181	17	174	NAC domain-containing protein 19
3swp_C	3e-75	13	181	17	174	NAC domain-containing protein 19
3swp_D	3e-75	13	181	17	174	NAC domain-containing protein 19
4dul_A	3e-75	13	181	14	171	NAC domain-containing protein 19
4dul_B	3e-75	13	181	14	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family associated with male fertility. {ECO:0000250}.
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00058	PBM	Transfer from AT1G61110	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017257164.1	1e-108	PREDICTED: NAC transcription factor 25-like
Swissprot	A2YMR0	1e-93	NAC10_ORYSI; NAC transcription factor ONAC010
Swissprot	Q8GY42	9e-94	NAC25_ARATH; NAC transcription factor 25
TrEMBL	A0A164VCV4	1e-106	A0A164VCV4_DAUCS; Uncharacterized protein
STRING	ERN03380	1e-106	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	4e-96	NAC domain containing protein 25