PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00046987-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 571aa    MW: 61418.5 Da    PI: 5.4502
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00046987-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.81.5e-11370412754
                       HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                       ++ErrRR+++N+++  Lr+++Pk +      K++ a+iL  A+eY+k+L
  PSME_00046987-RA 370 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 412
                       79*********************66......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58363412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-16366433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14369418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9369412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15370426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-12370416No hitNo description
CDDcd048734.26E-8499562No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 571 aa     Download sequence    Send to blast
MRNVTTVYGC QKTAKQRERM KEEAGEVIEM GGWVREKASR SEAGRAMACW ERRFIEEEEI  60
THHFIPIEQM ESFKAMLEDE WYIPGGQDSN SLMDELAYSS SFVSAPETSS VFGLDPSRLQ  120
SFMSFVPKKK TLPSTSMSSL LDAGAGASST SNFDGNVGLM GTPSLPPVNF GIGGAMVSGF  180
NAPSLLFNPS GIQLLGSSIP SSTQVGSLSP RLQFAGNDYN GLLVNGGGVD SGLSGLLVRG  240
GLDPRLPSLG NRSKAERGQA TLFQKRATAR NSSPAPLADE ESPNTMALRK SPKGDGVRVQ  300
SSNPEEEGEE PLGGEDNLDD ESGGGGSGLL YETDDAKPEQ AMSGQDGPAA GPGPPADKGK  360
KKGLPAKNLM AERRRRKKLN DRLYMLRSVV PKISKMDRAS ILGDAIEYLK ELLQRINDLH  420
TELEGTSERP LSATALPLPL NLPVPSPFHY PLTPSTPPLI PCRIKEECPP ISLPAHSEAS  480
DSQPARVEVK TKDGRSLNIH MFCARRPGLL LSTMRALDEL GLDVQQAVIS CFNGFALDVF  540
RAEQSRGGGD IALEEIKAVL LHTANSHQIT M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1359377KKKGLPAKNLMAERRRRKK
2371378ERRRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.41e-77bHLH family protein