PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00047014-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 203aa    MW: 22367.5 Da    PI: 5.175
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00047014-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.92.8e-2769315101
            DUF260  15 dCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101
                       dCv+ pyf++++ +++fa+vhk+FGa nv+kll +lp  +r +a+ +++yeA+ +++dP yG+v++i++lqqq+ +l+aela ++++l
  PSME_00047014-RA   6 DCVFTPYFCSNEgAARFAAVHKIFGAINVSKLLLHLPMPDRCEAVVTILYEAHDQLQDPFYGCVAHIFALQQQVVSLQAELAFVQAQL 93 
                       7*********9979*********************************************************************99885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.463193IPR004883Lateral organ boundaries, LOB
PfamPF031952.0E-24690IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MDSILDCVFT PYFCSNEGAA RFAAVHKIFG AINVSKLLLH LPMPDRCEAV VTILYEAHDQ  60
LQDPFYGCVA HIFALQQQVV SLQAELAFVQ AQLASRVSSG SALISVNHPV ISSSLYSQHL  120
LFPAHLSLPC HPIPQPYNAL LSRVKEENSC SFATYMDCDF SVSPNDSSSP LMEVLQRCRS  180
LEENEGEDNG EMQALAHALL RRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-19611325131LOB family transfactor Ramosa2.1
5ly0_B1e-19611325131LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5A9D35e-90D5A9D3_PICSI; Uncharacterized protein
STRINGPP1S261_2V6.13e-44(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.12e-40lateral organ boundaries-domain 16