PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00047068-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

ERF

Protein Properties

Length: 181aa MW: 20321.9 Da PI: 5.7328

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00047068-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	28.5	3.8e-09	12	38	28	54
AP2 28 rkrfslgkfgtaeeAakaaiaarkkle 54 ++r++lg+f tae+Aa+a+++a+ + PSME_00047068-RA 12 KTRVWLGTFETAEDAARAYDEAAIIMC 38 49********************98775 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	12.853	1	48	IPR001471	AP2/ERF domain
SMART	SM00380	4.9E-11	1	54	IPR001471	AP2/ERF domain
CDD	cd00018	2.67E-17	4	50	No hit	No description
SuperFamily	SSF54171	3.2E-10	8	49	IPR016177	DNA-binding domain
Pfam	PF00847	1.5E-5	10	38	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	9.7E-17	11	48	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MRNAFMKSLF RKTRVWLGTF ETAEDAARAY DEAAIIMCGP HNAKTNFTYD PNAPPSSKPS 60 FLSTALTAKL RQCYLASLDM EIQPQGTARK DHLQSPVLTP SNTSLTCLKL DTEKSNLGIW 120 QRRAGKQSES NWVMTVEFGS CSDRNQQLCL VKQETEDDIA SEMIEELFHP TSIEFSSKSD 180 T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT110788	1e-78	BT110788.1 Picea glauca clone GQ03227_P10 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002969836.1	4e-41	ethylene-responsive transcription factor WIN1
TrEMBL	A9NPV7	2e-47	A9NPV7_PICSI; Uncharacterized protein
STRING	EFJ28960	2e-40	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	6e-21	ERF family protein